finsyncR, an R package to synchronize 27 years of fish and invertebrate data across the United States Article Swipe
Michael B. Mahon
,
Devin K. Jones
,
Ryan A. Hill
,
Terry N. Brown
,
Ethan Allan Brown
,
Stefan Kunz
,
Samantha L. Rumschlag
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1101/2024.02.22.581615
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1101/2024.02.22.581615
The United States government collects some of the most comprehensive data on freshwater systems in existence, but barriers exist for new users to apply these data without institutional guidance. ‘finsyncR’ ( f ish and in vertebrate sync hronizer in R ) is an R package that streamlines the process of acquiring, processing, and integrating fish and macroinvertebrate datasets collected in streams and rivers, increasing access to cleaned data and ensuring straightforward application of the data. The data sources are the US Environmental Protection Agency’s National River and Streams Assessment and US Geological Survey’s BioData. The resulting datasets span 27 years (1993 to 2019) and include 8,115 sites, 15,169 sampling events, 963 macroinvertebrate genera, and 687 fish species. We document common challenges to working with these data including understanding sampling designs, harmonizing taxonomy, calculating densities and standardized abundances, accounting for differences in sampling effort, and considering improvements in taxonomic identifications. We anticipate this package will spur research exploring changes in fish and macroinvertebrate communities across space and time and the causes and consequences of those changes.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2024.02.22.581615
- https://www.biorxiv.org/content/biorxiv/early/2024/02/27/2024.02.22.581615.full.pdf
- OA Status
- green
- Cited By
- 3
- References
- 21
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4392351825
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4392351825Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2024.02.22.581615Digital Object Identifier
- Title
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finsyncR, an R package to synchronize 27 years of fish and invertebrate data across the United StatesWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
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2024-02-27Full publication date if available
- Authors
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Michael B. Mahon, Devin K. Jones, Ryan A. Hill, Terry N. Brown, Ethan Allan Brown, Stefan Kunz, Samantha L. RumschlagList of authors in order
- Landing page
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https://doi.org/10.1101/2024.02.22.581615Publisher landing page
- PDF URL
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https://www.biorxiv.org/content/biorxiv/early/2024/02/27/2024.02.22.581615.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2024/02/27/2024.02.22.581615.full.pdfDirect OA link when available
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Sampling (signal processing), Fish
, Biodiversity, sync, Geography, Computer science, Environmental resource management, Ecology, Fishery, Environmental science, Biology, Channel (broadcasting), Telecommunications, Detector Top concepts (fields/topics) attached by OpenAlex - Cited by
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3Total citation count in OpenAlex
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2025: 2, 2024: 1Per-year citation counts (last 5 years)
- References (count)
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21Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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