From isolated polyelectrolytes to star-like assemblies: The role of sequence heterogeneity on the statistical structure of the intrinsically disordered Neurofilament-low tail domain Article Swipe
Mathar Kravikass
,
Gil Koren
,
Omar A. Saleh
,
Roy Beck
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.48550/arxiv.2311.18337
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.48550/arxiv.2311.18337
Intrinsically disordered proteins (IDPs) are a subset of proteins that lack stable secondary structure. Given their polymeric nature, previous mean-field approximations have been used to describe the statistical structure of IDPs. However, the amino-acid sequence heterogeneity and complex intermolecular interaction network have significantly impeded the ability to get proper approximations. One such case is the intrinsically disordered tail domain of Neurofilament low (NFLt), which comprises a 50 residue-long uncharged domain followed by a 96 residue-long negatively charged domain. Here, we measure two NFLt variants to identify the impact of the NFLt two main subdomains on its complex interactions and statistical structure. Using synchrotron small-angle x-ray scattering, we find that the uncharged domain of the NFLt induces attractive interactions that cause it to self-assemble into star-like polymer brushes. On the other hand, when the uncharged domain is truncated, the remaining charged N-terminal domains remain isolated in solution with typical polyelectrolyte characteristics. We further discuss how competing long- and short-ranged interactions within the polymer brushes dominate their ensemble structure, and, in turn, their implications on previously observed phenomena in NFL native and diseased states.
Related Topics
Concepts
Intrinsically disordered proteins
Polyelectrolyte
Small-angle X-ray scattering
Domain (mathematical analysis)
Chemical physics
Polymer
Intermolecular force
Chemistry
Amino acid residue
Sequence (biology)
Crystallography
Residue (chemistry)
Scattering
Physics
Biophysics
Peptide sequence
Molecule
Biology
Mathematics
Optics
Biochemistry
Gene
Organic chemistry
Mathematical analysis
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- http://arxiv.org/abs/2311.18337
- https://arxiv.org/pdf/2311.18337
- OA Status
- green
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4389261002
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4389261002Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.48550/arxiv.2311.18337Digital Object Identifier
- Title
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From isolated polyelectrolytes to star-like assemblies: The role of sequence heterogeneity on the statistical structure of the intrinsically disordered Neurofilament-low tail domainWork title
- Type
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preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
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2023Year of publication
- Publication date
-
2023-11-30Full publication date if available
- Authors
-
Mathar Kravikass, Gil Koren, Omar A. Saleh, Roy BeckList of authors in order
- Landing page
-
https://arxiv.org/abs/2311.18337Publisher landing page
- PDF URL
-
https://arxiv.org/pdf/2311.18337Direct link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
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https://arxiv.org/pdf/2311.18337Direct OA link when available
- Concepts
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Intrinsically disordered proteins, Polyelectrolyte, Small-angle X-ray scattering, Domain (mathematical analysis), Chemical physics, Polymer, Intermolecular force, Chemistry, Amino acid residue, Sequence (biology), Crystallography, Residue (chemistry), Scattering, Physics, Biophysics, Peptide sequence, Molecule, Biology, Mathematics, Optics, Biochemistry, Gene, Organic chemistry, Mathematical analysisTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
- Related works (count)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.we | 79, 106 |
| abstract_inverted_index.NFL | 177 |
| abstract_inverted_index.One | 50 |
| abstract_inverted_index.and | 36, 98, 156, 179 |
| abstract_inverted_index.are | 4 |
| abstract_inverted_index.get | 47 |
| abstract_inverted_index.how | 153 |
| abstract_inverted_index.its | 95 |
| abstract_inverted_index.low | 61 |
| abstract_inverted_index.the | 26, 32, 44, 54, 86, 89, 109, 113, 128, 132, 137, 160 |
| abstract_inverted_index.two | 81, 91 |
| abstract_inverted_index.NFLt | 82, 90, 114 |
| abstract_inverted_index.and, | 167 |
| abstract_inverted_index.been | 22 |
| abstract_inverted_index.case | 52 |
| abstract_inverted_index.find | 107 |
| abstract_inverted_index.have | 21, 41 |
| abstract_inverted_index.into | 123 |
| abstract_inverted_index.lack | 10 |
| abstract_inverted_index.main | 92 |
| abstract_inverted_index.such | 51 |
| abstract_inverted_index.tail | 57 |
| abstract_inverted_index.that | 9, 108, 118 |
| abstract_inverted_index.used | 23 |
| abstract_inverted_index.when | 131 |
| abstract_inverted_index.with | 146 |
| abstract_inverted_index.Given | 14 |
| abstract_inverted_index.Here, | 78 |
| abstract_inverted_index.IDPs. | 30 |
| abstract_inverted_index.Using | 101 |
| abstract_inverted_index.cause | 119 |
| abstract_inverted_index.hand, | 130 |
| abstract_inverted_index.long- | 155 |
| abstract_inverted_index.other | 129 |
| abstract_inverted_index.their | 15, 164, 170 |
| abstract_inverted_index.turn, | 169 |
| abstract_inverted_index.which | 63 |
| abstract_inverted_index.x-ray | 104 |
| abstract_inverted_index.(IDPs) | 3 |
| abstract_inverted_index.domain | 58, 69, 111, 134 |
| abstract_inverted_index.impact | 87 |
| abstract_inverted_index.native | 178 |
| abstract_inverted_index.proper | 48 |
| abstract_inverted_index.remain | 142 |
| abstract_inverted_index.stable | 11 |
| abstract_inverted_index.subset | 6 |
| abstract_inverted_index.within | 159 |
| abstract_inverted_index.(NFLt), | 62 |
| abstract_inverted_index.ability | 45 |
| abstract_inverted_index.brushes | 162 |
| abstract_inverted_index.charged | 76, 139 |
| abstract_inverted_index.complex | 37, 96 |
| abstract_inverted_index.discuss | 152 |
| abstract_inverted_index.domain. | 77 |
| abstract_inverted_index.domains | 141 |
| abstract_inverted_index.further | 151 |
| abstract_inverted_index.impeded | 43 |
| abstract_inverted_index.induces | 115 |
| abstract_inverted_index.measure | 80 |
| abstract_inverted_index.nature, | 17 |
| abstract_inverted_index.network | 40 |
| abstract_inverted_index.polymer | 125, 161 |
| abstract_inverted_index.states. | 181 |
| abstract_inverted_index.typical | 147 |
| abstract_inverted_index.However, | 31 |
| abstract_inverted_index.brushes. | 126 |
| abstract_inverted_index.describe | 25 |
| abstract_inverted_index.diseased | 180 |
| abstract_inverted_index.dominate | 163 |
| abstract_inverted_index.ensemble | 165 |
| abstract_inverted_index.followed | 70 |
| abstract_inverted_index.identify | 85 |
| abstract_inverted_index.isolated | 143 |
| abstract_inverted_index.observed | 174 |
| abstract_inverted_index.previous | 18 |
| abstract_inverted_index.proteins | 2, 8 |
| abstract_inverted_index.sequence | 34 |
| abstract_inverted_index.solution | 145 |
| abstract_inverted_index.variants | 83 |
| abstract_inverted_index.competing | 154 |
| abstract_inverted_index.comprises | 64 |
| abstract_inverted_index.phenomena | 175 |
| abstract_inverted_index.polymeric | 16 |
| abstract_inverted_index.remaining | 138 |
| abstract_inverted_index.secondary | 12 |
| abstract_inverted_index.star-like | 124 |
| abstract_inverted_index.structure | 28 |
| abstract_inverted_index.uncharged | 68, 110, 133 |
| abstract_inverted_index.N-terminal | 140 |
| abstract_inverted_index.amino-acid | 33 |
| abstract_inverted_index.attractive | 116 |
| abstract_inverted_index.disordered | 1, 56 |
| abstract_inverted_index.mean-field | 19 |
| abstract_inverted_index.negatively | 75 |
| abstract_inverted_index.previously | 173 |
| abstract_inverted_index.structure, | 166 |
| abstract_inverted_index.structure. | 13, 100 |
| abstract_inverted_index.subdomains | 93 |
| abstract_inverted_index.truncated, | 136 |
| abstract_inverted_index.interaction | 39 |
| abstract_inverted_index.scattering, | 105 |
| abstract_inverted_index.small-angle | 103 |
| abstract_inverted_index.statistical | 27, 99 |
| abstract_inverted_index.synchrotron | 102 |
| abstract_inverted_index.implications | 171 |
| abstract_inverted_index.interactions | 97, 117, 158 |
| abstract_inverted_index.residue-long | 67, 74 |
| abstract_inverted_index.short-ranged | 157 |
| abstract_inverted_index.Intrinsically | 0 |
| abstract_inverted_index.Neurofilament | 60 |
| abstract_inverted_index.heterogeneity | 35 |
| abstract_inverted_index.intrinsically | 55 |
| abstract_inverted_index.self-assemble | 122 |
| abstract_inverted_index.significantly | 42 |
| abstract_inverted_index.approximations | 20 |
| abstract_inverted_index.intermolecular | 38 |
| abstract_inverted_index.approximations. | 49 |
| abstract_inverted_index.polyelectrolyte | 148 |
| abstract_inverted_index.characteristics. | 149 |
| cited_by_percentile_year | |
| countries_distinct_count | 0 |
| institutions_distinct_count | 4 |
| citation_normalized_percentile.value | 0.36120217 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |