Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf Traits Article Swipe
Han Zhang
,
Yige Cao
,
Zijian Wang
,
Meixia Ye
,
Rongling Wu
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/plants12030608
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/plants12030608
Shade avoidance syndrome (SAS) refers to a set of plant responses that increases light capture in dense stands. This process is crucial for plants in natural and agricultural environments as they compete for resources and avoid suboptimal conditions. Although the molecular, biochemical, and physiological mechanisms underlying the SAS response have been extensively studied, the genetic basis of developmental variation in leaves in regard to leaf area, petiole length, and leaf length (i.e., their allometric relationships) remains unresolved. In this study, with the recombinant inbred line (RIL) population, the developmental traits of leaves of Arabidopsis were investigated under two growth density conditions (high- and low-density plantings). The observed changes were then reconstructed digitally, and their allometric relationships were modelled. Taking the genome-wide association analysis, the SNP genotype and the dynamic phenotype of the leaf from both densities were combined to explore the allometry QTLs. Under different densities, leaf change phenotype was analyzed from two core ecological scenarios: (i) the allometric change of the leaf area with leaf length, and (ii) the change of the leaf length with petiole length. QTLs modulating these two scenarios were characterized as ‘leaf shape QTLs’ and ‘leaf position QTLs’. With functional mapping, results showed a total of 30 and 24 significant SNPs for shapeQTLs and positionQTLs, respectively. By annotation, immune pathway genes, photosensory receptor genes, and phytohormone genes were identified to be involved in the SAS response. Interestingly, genes modulating the immune pathway and salt tolerance, i.e., systemic acquired resistance (SAR) regulatory proteins (MININ-1-related) and salt tolerance homologs (STH), were reported to mediate the SAS response. By dissecting and comparing QTL effects from low- and high-density conditions, our results elucidate the genetic control of leaf formation in the context of the SAS response. The mechanism with leaf development × density interaction can further aid the development of density-tolerant crop varieties for agricultural practices.
Related Topics
Concepts
Biology
Petiole (insect anatomy)
Allometry
Leaf size
Gene
Phenotype
Arabidopsis thaliana
Quantitative trait locus
Genetics
Arabidopsis
Shade avoidance
Inbred strain
Population
Botany
Mutant
Ecology
Hymenoptera
Demography
Sociology
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/plants12030608
- https://www.mdpi.com/2223-7747/12/3/608/pdf?version=1675083357
- OA Status
- gold
- Cited By
- 6
- References
- 33
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4318484986
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4318484986Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/plants12030608Digital Object Identifier
- Title
-
Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf TraitsWork title
- Type
-
articleOpenAlex work type
- Language
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enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-01-30Full publication date if available
- Authors
-
Han Zhang, Yige Cao, Zijian Wang, Meixia Ye, Rongling WuList of authors in order
- Landing page
-
https://doi.org/10.3390/plants12030608Publisher landing page
- PDF URL
-
https://www.mdpi.com/2223-7747/12/3/608/pdf?version=1675083357Direct link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
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https://www.mdpi.com/2223-7747/12/3/608/pdf?version=1675083357Direct OA link when available
- Concepts
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Biology, Petiole (insect anatomy), Allometry, Leaf size, Gene, Phenotype, Arabidopsis thaliana, Quantitative trait locus, Genetics, Arabidopsis, Shade avoidance, Inbred strain, Population, Botany, Mutant, Ecology, Hymenoptera, Demography, SociologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
6Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3, 2024: 2, 2023: 1Per-year citation counts (last 5 years)
- References (count)
-
33Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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