GENCODE reference annotation for the human and mouse genomes Article Swipe
Adam Frankish
,
Mark Diekhans
,
Anne-Maud Ferreira
,
Rory Johnson
,
Irwin Jungreis
,
Jane Loveland
,
Jonathan M. Mudge
,
Cristina Sisu
,
James C. Wright
,
Joel Armstrong
,
If Barnes
,
Andrew Berry
,
Alexandra Bignell
,
Sílvia Carbonell Sala
,
Jacqueline Chrast
,
Fiona Cunningham
,
Tomás Di Domenico
,
Sarah Donaldson
,
Ian T. Fiddes
,
Carlos García Girón
,
José M. González
,
Tiago Grego
,
Matthew P. Hardy
,
Thibaut Hourlier
,
Toby Hunt
,
Osagie Izuogu
,
Julien Lagarde
,
Fergal J. Martin
,
Laura Martínez Gómez
,
Shamika Mohanan
,
Paul Muir
,
Fábio C. P. Navarro
,
Anne Parker
,
Baikang Pei
,
Fernando Campo del Pozo
,
Magali Ruffier
,
Bianca M. Schmitt
,
Eloise Stapleton
,
Marie‐Marthe Suner
,
Irina Sycheva
,
Barbara Uszczyńska-Ratajczak
,
Jinrui Xu
,
Andrew Yates
,
Daniel R. Zerbino
,
Yan Zhang
,
Bronwen Aken
,
Jyoti S. Choudhary
,
Mark Gerstein
,
Roderic Guigó
,
Tim Hubbard
,
Manolis Kellis
,
Benedict Paten
,
Alexandre Reymond
,
Michael L. Tress
,
Paul Flicek
·
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gky955
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gky955
The accurate identification and description of the genes in the human and mouse genomes is a fundamental requirement for high quality analysis of data informing both genome biology and clinical genomics. Over the last 15 years, the GENCODE consortium has been producing reference quality gene annotations to provide this foundational resource. The GENCODE consortium includes both experimental and computational biology groups who work together to improve and extend the GENCODE gene annotation. Specifically, we generate primary data, create bioinformatics tools and provide analysis to support the work of expert manual gene annotators and automated gene annotation pipelines. In addition, manual and computational annotation workflows use any and all publicly available data and analysis, along with the research literature to identify and characterise gene loci to the highest standard. GENCODE gene annotations are accessible via the Ensembl and UCSC Genome Browsers, the Ensembl FTP site, Ensembl Biomart, Ensembl Perl and REST APIs as well as https://www.gencodegenes.org.
Related Topics
Concepts
Ensembl
Annotation
Perl
Gene nomenclature
Genome
Genome browser
Biology
Genome project
Reference genome
Computational biology
Genomics
Gene Annotation
Workflow
Data curation
Gene prediction
Resource (disambiguation)
Human genome
RefSeq
Gene
Computer science
Bioinformatics
Genetics
World Wide Web
Database
Taxonomy (biology)
Botany
Computer network
Nomenclature
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/nar/gky955
- https://academic.oup.com/nar/article-pdf/47/D1/D766/27436288/gky955.pdf
- OA Status
- gold
- Cited By
- 3298
- References
- 51
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2898598946
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2898598946Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/nar/gky955Digital Object Identifier
- Title
-
GENCODE reference annotation for the human and mouse genomesWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2018Year of publication
- Publication date
-
2018-10-08Full publication date if available
- Authors
-
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew Berry, Alexandra Bignell, Sílvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah Donaldson, Ian T. Fiddes, Carlos García Girón, José M. González, Tiago Grego, Matthew P. Hardy, Thibaut Hourlier, Toby Hunt, Osagie Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez Gómez, Shamika Mohanan, Paul Muir, Fábio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Campo del Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie‐Marthe Suner, Irina Sycheva, Barbara Uszczyńska-Ratajczak, Jinrui Xu, Andrew Yates, Daniel R. Zerbino, Yan Zhang, Bronwen Aken, Jyoti S. Choudhary, Mark Gerstein, Roderic Guigó, Tim Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul FlicekList of authors in order
- Landing page
-
https://doi.org/10.1093/nar/gky955Publisher landing page
- PDF URL
-
https://academic.oup.com/nar/article-pdf/47/D1/D766/27436288/gky955.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/nar/article-pdf/47/D1/D766/27436288/gky955.pdfDirect OA link when available
- Concepts
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Ensembl, Annotation, Perl, Gene nomenclature, Genome, Genome browser, Biology, Genome project, Reference genome, Computational biology, Genomics, Gene Annotation, Workflow, Data curation, Gene prediction, Resource (disambiguation), Human genome, RefSeq, Gene, Computer science, Bioinformatics, Genetics, World Wide Web, Database, Taxonomy (biology), Botany, Computer network, NomenclatureTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3298Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 341, 2024: 449, 2023: 514, 2022: 618, 2021: 673Per-year citation counts (last 5 years)
- References (count)
-
51Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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