GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis Article Swipe

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Yufeng Gu , Arun Subramaniyan , Tim Dunn , Alireza Khadem , Kuan-Yu Chen , Somnath Paul , Vasimuddin Md , Sanchit Misra , David Blaauw , Satish Narayanasamy , Reetuparna Das ·

YOU? · · 2023 · Open Access · · DOI: https://doi.org/10.1145/3579371.3589060

This artifact contains the code and instructions for paper: "GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis" in International Symposium on Computer Architecture (ISCA), 2023.

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Application-Specific Integrated Circuit

Computer Science

Genomics

Embedded System

Hardware Acceleration

Artificial Intelligence

Environmental Engineering

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Application-specific integrated circuit Computer science Genomics Genetic programming Software Computer architecture Embedded system Hardware acceleration Acceleration Pipeline (software) Divergence (linguistics) Pipeline transport Parallel computing Genome Operating system Engineering Artificial intelligence Biology Biochemistry Physics Philosophy Classical mechanics Environmental engineering Gene Linguistics

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Type: article
Language: en
Landing Page: https://doi.org/10.1145/3579371.3589060
OA Status: green
Cited By: 13
References: 48
Related Works: 10
OpenAlex ID: https://openalex.org/W4362204511

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OpenAlex ID: https://openalex.org/W4362204511

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DOI: https://doi.org/10.1145/3579371.3589060

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Title: GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis

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Type: article

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Language: en

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Publication year: 2023

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Publication date: 2023-06-16

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Authors: Yufeng Gu, Arun Subramaniyan, Tim Dunn, Alireza Khadem, Kuan-Yu Chen, Somnath Paul, Vasimuddin Md, Sanchit Misra, David Blaauw, Satish Narayanasamy, Reetuparna Das

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Landing page: https://doi.org/10.1145/3579371.3589060

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Concepts: Application-specific integrated circuit, Computer science, Genomics, Genetic programming, Software, Computer architecture, Embedded system, Hardware acceleration, Acceleration, Pipeline (software), Divergence (linguistics), Pipeline transport, Parallel computing, Genome, Operating system, Engineering, Artificial intelligence, Biology, Biochemistry, Physics, Philosophy, Classical mechanics, Environmental engineering, Gene, Linguistics

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Cited by: 13

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Citations by year (recent): 2025: 10, 2024: 3

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