Genetic Diversity, Population Structure, and Parentage Analysis of Croatian Grapevine Germplasm Article Swipe
Maja Žulj Mihaljević
,
Edi Maletić
,
Darko Preiner
,
Goran Zdunić
,
Marijan Bubola
,
Eva Zyprian
,
Ivan Pejić
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.3390/genes11070737
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.3390/genes11070737
Croatian viticulture was most extensive at the beginning of the 20th century, when about 400 varieties were in use. Autochthonous varieties are the result of spontaneous hybridization from the pre-phylloxera era and are still cultivated today on about 35 % of vineyard area, while some exist only in repositories. We present what is the most comprehensive genetic analysis of all major Croatian national repositories, with a large number of microsatellite, or simple sequence repeat (SSR) markers, and it is also the first study to apply single nucleotide polymorphism (SNP) markers. After 212 accessions were fingerprinted, 95 were classified as unique to Croatian germplasm. Genetic diversity of Croatian germplasm is rather high considering its size. SNP markers proved useful for fingerprinting but less informative and practical than SSRs. Analysis of the genetic structure showed that Croatian germplasm is predominantly part of the Balkan grape gene pool. A high number of admixed varieties and synonyms is a consequence of complex pedigrees and migrations. Parentage analysis confirmed 24 full parentages, as well as 113 half-kinships. Unexpectedly, several key genitors could not be detected within the present Croatian germplasm. The low number of reconstructed parentages (19%) points to severe genetic erosion and stresses the importance of germplasm repositories.
Related Topics
Concepts
Germplasm
Croatian
Genetic diversity
Biology
Pedigree chart
Microsatellite
Genetic structure
Genetic erosion
Population
Genetics
Genetic variation
Botany
Allele
Gene
Demography
Linguistics
Sociology
Philosophy
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/genes11070737
- https://www.mdpi.com/2073-4425/11/7/737/pdf?version=1594986782
- OA Status
- gold
- Cited By
- 47
- References
- 116
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3040066118
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3040066118Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3390/genes11070737Digital Object Identifier
- Title
-
Genetic Diversity, Population Structure, and Parentage Analysis of Croatian Grapevine GermplasmWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2020Year of publication
- Publication date
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2020-07-02Full publication date if available
- Authors
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Maja Žulj Mihaljević, Edi Maletić, Darko Preiner, Goran Zdunić, Marijan Bubola, Eva Zyprian, Ivan PejićList of authors in order
- Landing page
-
https://doi.org/10.3390/genes11070737Publisher landing page
- PDF URL
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https://www.mdpi.com/2073-4425/11/7/737/pdf?version=1594986782Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
- OA URL
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https://www.mdpi.com/2073-4425/11/7/737/pdf?version=1594986782Direct OA link when available
- Concepts
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Germplasm, Croatian, Genetic diversity, Biology, Pedigree chart, Microsatellite, Genetic structure, Genetic erosion, Population, Genetics, Genetic variation, Botany, Allele, Gene, Demography, Linguistics, Sociology, PhilosophyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
47Total citation count in OpenAlex
- Citations by year (recent)
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2025: 5, 2024: 12, 2023: 11, 2022: 11, 2021: 8Per-year citation counts (last 5 years)
- References (count)
-
116Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.germplasm. | 102, 184 |
| abstract_inverted_index.importance | 200 |
| abstract_inverted_index.nucleotide | 86 |
| abstract_inverted_index.parentages | 190 |
| abstract_inverted_index.consequence | 155 |
| abstract_inverted_index.considering | 111 |
| abstract_inverted_index.informative | 122 |
| abstract_inverted_index.migrations. | 160 |
| abstract_inverted_index.parentages, | 166 |
| abstract_inverted_index.spontaneous | 25 |
| abstract_inverted_index.viticulture | 1 |
| abstract_inverted_index.polymorphism | 87 |
| abstract_inverted_index.Autochthonous | 19 |
| abstract_inverted_index.Unexpectedly, | 172 |
| abstract_inverted_index.comprehensive | 55 |
| abstract_inverted_index.hybridization | 26 |
| abstract_inverted_index.predominantly | 137 |
| abstract_inverted_index.reconstructed | 189 |
| abstract_inverted_index.repositories, | 63 |
| abstract_inverted_index.repositories. | 48, 203 |
| abstract_inverted_index.fingerprinted, | 94 |
| abstract_inverted_index.fingerprinting | 119 |
| abstract_inverted_index.half-kinships. | 171 |
| abstract_inverted_index.pre-phylloxera | 29 |
| abstract_inverted_index.microsatellite, | 69 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 98 |
| corresponding_author_ids | https://openalex.org/A5038625904 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 7 |
| corresponding_institution_ids | https://openalex.org/I181343428 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/2 |
| sustainable_development_goals[0].score | 0.550000011920929 |
| sustainable_development_goals[0].display_name | Zero hunger |
| sustainable_development_goals[1].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[1].score | 0.4099999964237213 |
| sustainable_development_goals[1].display_name | Life in Land |
| citation_normalized_percentile.value | 0.96518866 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |