Genome assembly of the southern pine beetle ( Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in Dendroctonus Article Swipe
Megan Copeland
,
Shelby Landa
,
Adekola Owoyemi
,
Michelle M. Jonika
,
James M. Alfieri
,
J. Spencer Johnston
,
Terrence Sylvester
,
Bethany R. Kyre
,
Zachary Hoover
,
Carl E. Hjelmen
,
Lynne K. Rieske
,
Heath Blackmon
,
Claudio Casola
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1098/rsos.240755
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1098/rsos.240755
Dendroctonus frontalis also known as southern pine beetle (SPB), is the most damaging insect forest pest in the southeastern United States. Genomic data are important to provide information on pest biology and to identify molecular targets to develop improved pest management approaches. Here, we produced a chromosome-level genome assembly of SPB using long-read sequencing data. Synteny analyses confirmed the conservation of the core Coleopteran Stevens elements and validated the bona fide SPB X chromosome. Transcriptomic data were used to obtain 39 588 transcripts corresponding to 13 354 putative protein-coding loci. Comparative analyses of gene content across 14 beetles and three other insects revealed several losses of conserved genes in the Dendroctonus clade and gene gains in SPB and Dendroctonus that were enriched for loci encoding membrane proteins and extracellular matrix proteins. While lineage-specific gene losses contributed to the gene content reduction observed in Dendroctonus , we also showed that widespread misannotation of transposable elements represents an important cause of the apparent gene expansion in several non- Dendroctonus species. Our findings uncovered distinctive features of the SPB gene complement and disentangled the role of biological and annotation-related factors contributing to gene content variation across beetles.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1098/rsos.240755
- OA Status
- gold
- Cited By
- 1
- References
- 68
- Related Works
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- OpenAlex ID
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All OpenAlex metadata
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https://openalex.org/W4405220992Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1098/rsos.240755Digital Object Identifier
- Title
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Genome assembly of the southern pine beetle ( Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in DendroctonusWork title
- Type
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articleOpenAlex work type
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enPrimary language
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2024Year of publication
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2024-12-01Full publication date if available
- Authors
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Megan Copeland, Shelby Landa, Adekola Owoyemi, Michelle M. Jonika, James M. Alfieri, J. Spencer Johnston, Terrence Sylvester, Bethany R. Kyre, Zachary Hoover, Carl E. Hjelmen, Lynne K. Rieske, Heath Blackmon, Claudio CasolaList of authors in order
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.1098/rsos.240755Direct OA link when available
- Concepts
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Dendroctonus, Biology, Genome, Gene, Evolutionary biology, Bark beetle, Genetics, Botany, CurculionidaeTop concepts (fields/topics) attached by OpenAlex
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1Total citation count in OpenAlex
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2025: 1Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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