Genome wide association study for growth and carcass traits in the Amazon fish Colossoma macropomum Article Swipe
YOU?
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· 2023
· Open Access
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· DOI: https://doi.org/10.21203/rs.3.rs-3750262/v1
Background Growth and carcasses yield are economically important traits for the Amazon fish tambaqui ( Colossoma macropomum ). However, carcasses yield has received little attention in breeding programs because it is difficult to measure on many fish and it cannot be directly measured on breeding candidates. The goal of this study was to unravel the genetic architecture of growth and carcasses yield traits, as well as to identify candidate genes influencing these traits, in an experimental tambaqui population in Southeastern Brazil, by using ddRAD-sequencing (double digest restriction-site associated DNA) and GWAS (genome-wide association study) methods. Methods and Results Phenotype data from 11 full-sib families, with a total of 365 individuals, were evaluated for 15 months. Eight growth characteristics were measured. Each fish was processed in the following body regions: head, rib, loin, R + L (rib + loin). GWAS analysis identified a total of 3 SNPs with chromosome significance, which were associated with six growth/yield traits (HL, SL, Body weight, R + L weight, Head weight and Rib weight), distributed into two linkage groups (LG 11 and 19). We highlighted three genes (ptpre, glrx3, and ebf3a) close to the QTLs that represents candidates for further functional validation to uncover biological mechanisms underlying variation for these traits in tambaqui. Conclusions In conclusion, our results indicated that growth and carcasses yield traits are polygenic in tambaqui, with the most important loci explaining only 0.2% of the genetic variance for the trait.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.21203/rs.3.rs-3750262/v1
- OA Status
- green
- References
- 43
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4390038273
Raw OpenAlex JSON
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https://openalex.org/W4390038273Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.21203/rs.3.rs-3750262/v1Digital Object Identifier
- Title
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Genome wide association study for growth and carcass traits in the Amazon fish Colossoma macropomumWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
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2023-12-20Full publication date if available
- Authors
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Raquel B. Ariede, Milena V. Freitas, Rubens R. Oliveira Neto, John F.G. Agudelo, Lieschen Valeria Guerra Lira, Carolina H. S. Borges, Vito A. Mastrochirico-Filho, Diogo Teruo HashimotoList of authors in order
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https://doi.org/10.21203/rs.3.rs-3750262/v1Publisher landing page
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
- OA URL
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https://doi.org/10.21203/rs.3.rs-3750262/v1Direct OA link when available
- Concepts
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Tambaqui, Biology, Genome-wide association study, Loin, Genetic architecture, Genetic association, Phenotypic trait, Genetics, Quantitative trait locus, Single-nucleotide polymorphism, Fish
, Gene, Phenotype, Genotype, Animal science, Fishery Top concepts (fields/topics) attached by OpenAlex - Cited by
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0Total citation count in OpenAlex
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43Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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