Genome-Wide Association Study Identifies the Crucial Candidate Genes for Teat Number in Crossbred Commercial Pigs Article Swipe
Lijuan Yang
,
Xuehua Li
,
Zhanwei Zhuang
,
Shenping Zhou
,
Jie Wu
,
Cineng Xu
,
Donglin Ruan
,
Yibin Qiu
,
Hua Zhao
,
Enqin Zheng
,
Gengyuan Cai
,
Zhenfang Wu
,
Jie Yang
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/ani13111880
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.3390/ani13111880
The number of teats is a crucial reproductive trait with significant economic implications on maternal capacity and litter size. Consequently, improving this trait is essential to facilitate genetic selection for increased litter size. In this study, we performed a genome-wide association study (GWAS) of the number of teats in a three-way crossbred commercial Duroc × (Landrace × Yorkshire) (DLY) pig population comprising 1518 animals genotyped with the 50K BeadChip. Our analysis identified crucial quantitative trait loci (QTL) for the number of teats, containing the ABCD4 and VRTN genes on porcine chromosome 7. Our results establish SNP variants of ABCD4 and VRTN as new molecular markers for improving the number of teats in DLY pigs. Furthermore, the most significant noteworthy single nucleotide polymorphism (SNP) (7_97568284) was identified within the ABCD4 gene, exhibiting a significant association with the total teat number traits. This SNP accounted for a substantial proportion of the genetic variance, explaining 6.64% of the observed variation. These findings reveal a novel gene on SSC7 for the number of teats and provide a deeper understanding of the genetic mechanisms underlying reproductive traits.
Related Topics
Concepts
Biology
Single-nucleotide polymorphism
Crossbreed
Genome-wide association study
Quantitative trait locus
SNP
Candidate gene
Genetics
Genetic association
Litter
Trait
Population
Gene
Genetic variation
Genotype
Medicine
Computer science
Programming language
Environmental health
Agronomy
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/ani13111880
- https://www.mdpi.com/2076-2615/13/11/1880/pdf?version=1686215161
- OA Status
- gold
- Cited By
- 8
- References
- 36
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4379520261
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4379520261Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/ani13111880Digital Object Identifier
- Title
-
Genome-Wide Association Study Identifies the Crucial Candidate Genes for Teat Number in Crossbred Commercial PigsWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-06-05Full publication date if available
- Authors
-
Lijuan Yang, Xuehua Li, Zhanwei Zhuang, Shenping Zhou, Jie Wu, Cineng Xu, Donglin Ruan, Yibin Qiu, Hua Zhao, Enqin Zheng, Gengyuan Cai, Zhenfang Wu, Jie YangList of authors in order
- Landing page
-
https://doi.org/10.3390/ani13111880Publisher landing page
- PDF URL
-
https://www.mdpi.com/2076-2615/13/11/1880/pdf?version=1686215161Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.mdpi.com/2076-2615/13/11/1880/pdf?version=1686215161Direct OA link when available
- Concepts
-
Biology, Single-nucleotide polymorphism, Crossbreed, Genome-wide association study, Quantitative trait locus, SNP, Candidate gene, Genetics, Genetic association, Litter, Trait, Population, Gene, Genetic variation, Genotype, Medicine, Computer science, Programming language, Environmental health, AgronomyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
8Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 3, 2024: 5Per-year citation counts (last 5 years)
- References (count)
-
36Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.chromosome | 90 |
| abstract_inverted_index.commercial | 52 |
| abstract_inverted_index.comprising | 61 |
| abstract_inverted_index.containing | 82 |
| abstract_inverted_index.exhibiting | 130 |
| abstract_inverted_index.explaining | 151 |
| abstract_inverted_index.facilitate | 26 |
| abstract_inverted_index.identified | 71, 125 |
| abstract_inverted_index.mechanisms | 178 |
| abstract_inverted_index.noteworthy | 118 |
| abstract_inverted_index.nucleotide | 120 |
| abstract_inverted_index.population | 60 |
| abstract_inverted_index.proportion | 146 |
| abstract_inverted_index.underlying | 179 |
| abstract_inverted_index.variation. | 156 |
| abstract_inverted_index.association | 40, 133 |
| abstract_inverted_index.genome-wide | 39 |
| abstract_inverted_index.significant | 10, 117, 132 |
| abstract_inverted_index.substantial | 145 |
| abstract_inverted_index.(7_97568284) | 123 |
| abstract_inverted_index.Furthermore, | 114 |
| abstract_inverted_index.implications | 12 |
| abstract_inverted_index.polymorphism | 121 |
| abstract_inverted_index.quantitative | 73 |
| abstract_inverted_index.reproductive | 7, 180 |
| abstract_inverted_index.Consequently, | 19 |
| abstract_inverted_index.understanding | 174 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 97 |
| corresponding_author_ids | https://openalex.org/A5090269873, https://openalex.org/A5061908529 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 13 |
| corresponding_institution_ids | https://openalex.org/I101479585, https://openalex.org/I4210098034 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/2 |
| sustainable_development_goals[0].score | 0.4300000071525574 |
| sustainable_development_goals[0].display_name | Zero hunger |
| citation_normalized_percentile.value | 0.94402887 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |