Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation Article Swipe

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Xin Li , Sangang He , Wen-Rong Li , Ling-Yun Luo , Ze Yan , Dong-Xin Mo , Xing Wan , Feng‐Hua Lv , Ji Yang , Yaxi Xu , Juan Deng , Qianghui Zhu , Xinglong Xie , Songsong Xu , Chen-Xi Liu , Xinrong Peng , Bin Han , Zhonghui Li , Lei Chen , Jianlin Han , Xuezhi Ding , Renqing Dingkao , Yuefeng Chu , Jinyan Wu , Limin Wang , Ping Zhou , Mingjun Liu , Meng-Hua Li ·

YOU? · · 2022 · Open Access · · DOI: https://doi.org/10.1101/gr.276769.122

Understanding the genetic mechanisms of phenotypic variation in hybrids between domestic animals and their wild relatives may aid germplasm innovation. Here, we report the high-quality genome assemblies of a male Pamir argali ( O . ammon polii , 2 n = 56), a female Tibetan sheep ( O . aries , 2 n = 54), and a male hybrid of Pamir argali and domestic sheep, and the high-throughput sequencing of 425 ovine animals, including the hybrids of argali and domestic sheep. We detected genomic synteny between Chromosome 2 of sheep and two acrocentric chromosomes of argali. We revealed consistent satellite repeats around the chromosome breakpoints, which could have resulted in chromosome fusion. We observed many more hybrids with karyotype 2 n = 54 than with 2 n = 55, which could be explained by the selfish centromeres, the possible decreased rate of normal/balanced sperm, and the increased incidence of early pregnancy loss in the aneuploid ewes or rams. We identified genes and variants associated with important morphological and production traits (e.g., body weight, cannon circumference, hip height, and tail length) that show significant variations. We revealed a strong selective signature at the mutation (c.334C > A, p.G112W) in TBXT and confirmed its association with tail length among sheep populations of wide geographic and genetic origins. We produced an intercross population of 110 F 2 offspring with varied number of vertebrae and validated the causal mutation by whole-genome association analysis. We verified its function using CRISPR-Cas9 genome editing. Our results provide insights into chromosomal speciation and phenotypic evolution and a foundation of genetic variants for the breeding of sheep and other animals.

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Biology Genetics Germplasm Hybrid Synteny Population Centromere Genome Chromosome Evolutionary biology Gene Botany Agronomy Sociology Demography

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Type: article
Language: en
Landing Page: https://doi.org/10.1101/gr.276769.122
PDF: https://genome.cshlp.org/content/32/9/1669.full.pdf
OA Status: hybrid
Cited By: 86
References: 117
Related Works: 10
OpenAlex ID: https://openalex.org/W4290973859

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DOI: https://doi.org/10.1101/gr.276769.122

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Title: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation

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Language: en

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Publication year: 2022

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Publication date: 2022-08-10

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Authors: Xin Li, Sangang He, Wen-Rong Li, Ling-Yun Luo, Ze Yan, Dong-Xin Mo, Xing Wan, Feng‐Hua Lv, Ji Yang, Yaxi Xu, Juan Deng, Qianghui Zhu, Xinglong Xie, Songsong Xu, Chen-Xi Liu, Xinrong Peng, Bin Han, Zhonghui Li, Lei Chen, Jianlin Han, Xuezhi Ding, Renqing Dingkao, Yuefeng Chu, Jinyan Wu, Limin Wang, Ping Zhou, Mingjun Liu, Meng-Hua Li

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Landing page: https://doi.org/10.1101/gr.276769.122

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Concepts: Biology, Genetics, Germplasm, Hybrid, Synteny, Population, Centromere, Genome, Chromosome, Evolutionary biology, Gene, Botany, Agronomy, Sociology, Demography

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Cited by: 86

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