Genomic architecture of potato resistance to Synchytrium endobioticum disentangled using SSR markers and the 8.3k SolCAP SNP genotyping array Article Swipe
Jude Obidiegwu
,
Rena Sanetomo
,
Kerstin Flath
,
Eckhard Tacke
,
Hans-Reinhard Hofferbert
,
Andrea Hofmann
,
Birgit Walkemeier
,
Christiane Gebhardt
·
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1186/s12863-015-0195-y
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1186/s12863-015-0195-y
The soil borne, obligate biotrophic fungus Synchytrium endobioticum causes tumor-like tissue proliferation (wart) in potato tubers and thereby considerable crop damage. Chemical control is not effective and unfriendly to the environment. S. endobioticum is therefore a quarantined pathogen. The emergence of new pathotypes of the fungus aggravate this agricultural problem. The best control of wart disease is the cultivation of resistant varieties. Phenotypic screening for resistant cultivars is however time, labor and material intensive. Breeding for resistance would therefore greatly benefit from diagnostic DNA markers that can be applied early in the breeding cycle. The prerequisite for the development of diagnostic DNA markers is the genetic dissection of the factors that control resistance to S. endobioticum in various genetic backgrounds of potato. Progeny of a cross between a wart resistant and a susceptible tetraploid breeding clone was evaluated for resistance to S. endobioticum pathotypes 1, 2, 6 and 18 most relevant in Europe. The same progeny was genotyped with 195 microsatellite and 8303 single nucleotide polymorphism (SNP) markers. Linkage analysis identified the multi-allelic locus Sen1/RSe-XIa on potato chromosome XI as major factor for resistance to all four S. endobioticum pathotypes. Six additional, independent modifier loci had smaller effects on wart resistance. Combinations of markers linked to Sen1/RSe-XIa resistance alleles with one to two additional markers were sufficient for obtaining high levels of resistance to S. endobioticum pathotypes 1, 2, 6 and 18 in the analyzed genetic background. Potato resistance to S. endobioticum is oligogenic with one major and several minor resistance loci. It is composed of multiple alleles for resistance and susceptibility that originate from multiple sources. The genetics of resistance to S. endobioticum varies therefore between different genetic backgrounds. The DNA markers described in this paper are the starting point for pedigree based selection of cultivars with high levels of resistance to S. endobioticum pathotypes 1, 2, 6 and 18.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1186/s12863-015-0195-y
- https://bmcgenomdata.biomedcentral.com/counter/pdf/10.1186/s12863-015-0195-y
- OA Status
- diamond
- Cited By
- 34
- References
- 34
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2048788451
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Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2048788451Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1186/s12863-015-0195-yDigital Object Identifier
- Title
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Genomic architecture of potato resistance to Synchytrium endobioticum disentangled using SSR markers and the 8.3k SolCAP SNP genotyping arrayWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2015Year of publication
- Publication date
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2015-04-15Full publication date if available
- Authors
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Jude Obidiegwu, Rena Sanetomo, Kerstin Flath, Eckhard Tacke, Hans-Reinhard Hofferbert, Andrea Hofmann, Birgit Walkemeier, Christiane GebhardtList of authors in order
- Landing page
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https://doi.org/10.1186/s12863-015-0195-yPublisher landing page
- PDF URL
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https://bmcgenomdata.biomedcentral.com/counter/pdf/10.1186/s12863-015-0195-yDirect link to full text PDF
- Open access
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YesWhether a free full text is available
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diamondOpen access status per OpenAlex
- OA URL
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https://bmcgenomdata.biomedcentral.com/counter/pdf/10.1186/s12863-015-0195-yDirect OA link when available
- Concepts
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Biology, Genetics, Genetic marker, Locus (genetics), Plant disease resistance, Allele, GeneTop concepts (fields/topics) attached by OpenAlex
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34Total citation count in OpenAlex
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2025: 1, 2024: 5, 2023: 1, 2022: 5, 2021: 2Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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