Genomic identification and evolutionary analysis of chemosensory receptor gene families in two Phthorimaea pest species: insights into chemical ecology and host adaptation Article Swipe
Ruipeng Chen
,
Junjie Yan
,
Jacob D. Wickham
,
Yulin Gao
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1186/s12864-024-10428-6
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1186/s12864-024-10428-6
Background Insects rely on sophisticated sensitive chemosensory systems to sense their complex chemical environment. This sensory process involves a combination of odorant receptors (ORs), gustatory receptors (GRs) and ionotropic receptors (IRs) in the chemosensory system. This study focused on the identification and characterization of these three types of chemosensory receptor genes in two closely related Phthorimaea pest species, Phthorimaea operculella (potato tuber moth) and Phthorimaea absoluta (tomato leaf miner). Results Based on manual annotation of the genome, we identified a total of 349 chemoreceptor genes from the genome of P. operculella , including 93 OR , 206 GR and 50 IR genes, while for P. absoluta, we identified 72 OR , 122 GR and 46 IR genes. Through phylogenetic analysis, we observed minimal differences in the number and types of ORs and IRs between the potato tuber moth and tomato leaf miner. In addition, we found that compared with those of tomato leaf miners, the gustatory receptor branch of P. operculella has undergone a large expansion, which may be related to P. absoluta having a narrower host range than P. operculella . Through analysis of differentially expressed genes (DEGs) of male and female antennae, we uncovered 45 DEGs (including 32ORs, 9 GRs, and 4 IRs). Conclusions Our research provides a foundation for exploring the chemical ecology of these two pests and offers new insights into the dietary differentiation of lepidopteran insects, while simultaneously providing molecular targets for developing environmentally friendly pest control methods based on insect chemoreception.
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- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1186/s12864-024-10428-6
- https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-024-10428-6
- OA Status
- gold
- Cited By
- 9
- References
- 93
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4397032783
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Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4397032783Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1186/s12864-024-10428-6Digital Object Identifier
- Title
-
Genomic identification and evolutionary analysis of chemosensory receptor gene families in two Phthorimaea pest species: insights into chemical ecology and host adaptationWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-05-18Full publication date if available
- Authors
-
Ruipeng Chen, Junjie Yan, Jacob D. Wickham, Yulin GaoList of authors in order
- Landing page
-
https://doi.org/10.1186/s12864-024-10428-6Publisher landing page
- PDF URL
-
https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-024-10428-6Direct link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
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https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-024-10428-6Direct OA link when available
- Concepts
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Biology, Adaptation (eye), Identification (biology), Host (biology), Ecology, Chemical ecology, Host adaptation, Evolutionary biology, Gene, PEST analysis, Genetics, Computational biology, Genome, Botany, NeuroscienceTop concepts (fields/topics) attached by OpenAlex
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9Total citation count in OpenAlex
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2025: 6, 2024: 3Per-year citation counts (last 5 years)
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93Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.minimal | 123 |
| abstract_inverted_index.odorant | 22 |
| abstract_inverted_index.process | 17 |
| abstract_inverted_index.related | 55, 170 |
| abstract_inverted_index.sensory | 16 |
| abstract_inverted_index.system. | 35 |
| abstract_inverted_index.systems | 8 |
| abstract_inverted_index.targets | 236 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.absoluta | 66, 173 |
| abstract_inverted_index.analysis | 184 |
| abstract_inverted_index.chemical | 13, 215 |
| abstract_inverted_index.compared | 148 |
| abstract_inverted_index.friendly | 240 |
| abstract_inverted_index.insects, | 231 |
| abstract_inverted_index.insights | 224 |
| abstract_inverted_index.involves | 18 |
| abstract_inverted_index.narrower | 176 |
| abstract_inverted_index.observed | 122 |
| abstract_inverted_index.provides | 209 |
| abstract_inverted_index.receptor | 50, 157 |
| abstract_inverted_index.research | 208 |
| abstract_inverted_index.species, | 58 |
| abstract_inverted_index.absoluta, | 106 |
| abstract_inverted_index.addition, | 144 |
| abstract_inverted_index.analysis, | 120 |
| abstract_inverted_index.antennae, | 194 |
| abstract_inverted_index.exploring | 213 |
| abstract_inverted_index.expressed | 187 |
| abstract_inverted_index.gustatory | 25, 156 |
| abstract_inverted_index.including | 93 |
| abstract_inverted_index.molecular | 235 |
| abstract_inverted_index.providing | 234 |
| abstract_inverted_index.receptors | 23, 26, 30 |
| abstract_inverted_index.sensitive | 6 |
| abstract_inverted_index.uncovered | 196 |
| abstract_inverted_index.undergone | 163 |
| abstract_inverted_index.(including | 199 |
| abstract_inverted_index.Background | 1 |
| abstract_inverted_index.annotation | 74 |
| abstract_inverted_index.developing | 238 |
| abstract_inverted_index.expansion, | 166 |
| abstract_inverted_index.foundation | 211 |
| abstract_inverted_index.identified | 79, 108 |
| abstract_inverted_index.ionotropic | 29 |
| abstract_inverted_index.Conclusions | 206 |
| abstract_inverted_index.Phthorimaea | 56, 59, 65 |
| abstract_inverted_index.combination | 20 |
| abstract_inverted_index.differences | 124 |
| abstract_inverted_index.operculella | 60, 91, 161, 181 |
| abstract_inverted_index.chemosensory | 7, 34, 49 |
| abstract_inverted_index.environment. | 14 |
| abstract_inverted_index.lepidopteran | 230 |
| abstract_inverted_index.phylogenetic | 119 |
| abstract_inverted_index.chemoreceptor | 84 |
| abstract_inverted_index.sophisticated | 5 |
| abstract_inverted_index.differentially | 186 |
| abstract_inverted_index.identification | 41 |
| abstract_inverted_index.simultaneously | 233 |
| abstract_inverted_index.chemoreception. | 247 |
| abstract_inverted_index.differentiation | 228 |
| abstract_inverted_index.environmentally | 239 |
| abstract_inverted_index.characterization | 43 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 96 |
| countries_distinct_count | 3 |
| institutions_distinct_count | 4 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.49000000953674316 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.92377309 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |