GP-Plotter: Flexible Spectral Visualization for Proteomics Data with Emphasis on Glycoproteomics Analysis Article Swipe
Zheng Fang
,
Mingming Dong
,
Hongqiang Qin
,
Mingliang Ye
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/gpbjnl/qzae069
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/gpbjnl/qzae069
Identification evaluation and result dissemination are essential components in mass spectrometry-based proteomics analysis. The visualization of fragment ions in mass spectrum provides strong evidence for peptide identification and modification localization. Here, we present an easy-to-use tool, named GP-Plotter, for ion annotation of tandem mass spectra and corresponding image output. Identification result files of common searching tools in the community and user-customized files are supported as input of GP-Plotter. Multiple display modes and parameter customization can be achieved in GP-Plotter to present annotated spectra of interest. Different image formats, especially vector graphic formats, are available for image generation which is favorable for data publication. Notably, GP-Plotter is also well-suited for the visualization and evaluation of glycopeptide spectrum assignments with comprehensive annotation of glycan fragment ions. With a user-friendly graphical interface, GP-Plotter is expected to be a universal visualization tool for the community. GP-Plotter has been implemented in the latest version of Glyco-Decipher (v1.0.4) and the standalone GP-Plotter software is also freely available at https://github.com/DICP-1809.
Related Topics
Concepts
Plotter
Computer science
Visualization
Identification (biology)
Annotation
Graphical user interface
Interface (matter)
Software
Workflow
Computer graphics (images)
Bioinformatics
Pattern recognition (psychology)
Data mining
Artificial intelligence
Database
Programming language
Biology
Botany
Maximum bubble pressure method
Parallel computing
Bubble
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/gpbjnl/qzae069
- OA Status
- gold
- Cited By
- 1
- References
- 30
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4403216056
All OpenAlex metadata
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- OpenAlex ID
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https://openalex.org/W4403216056Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/gpbjnl/qzae069Digital Object Identifier
- Title
-
GP-Plotter: Flexible Spectral Visualization for Proteomics Data with Emphasis on Glycoproteomics AnalysisWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-10-01Full publication date if available
- Authors
-
Zheng Fang, Mingming Dong, Hongqiang Qin, Mingliang YeList of authors in order
- Landing page
-
https://doi.org/10.1093/gpbjnl/qzae069Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
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https://doi.org/10.1093/gpbjnl/qzae069Direct OA link when available
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Plotter, Computer science, Visualization, Identification (biology), Annotation, Graphical user interface, Interface (matter), Software, Workflow, Computer graphics (images), Bioinformatics, Pattern recognition (psychology), Data mining, Artificial intelligence, Database, Programming language, Biology, Botany, Maximum bubble pressure method, Parallel computing, BubbleTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
1Total citation count in OpenAlex
- Citations by year (recent)
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2025: 1Per-year citation counts (last 5 years)
- References (count)
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30Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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