Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome Article Swipe
Anuradha Ravi
,
Perla Troncoso‐Rey
,
Jennifer Ahn‐Jarvis
,
Kendall R. Corbin
,
Suzanne Harris
,
Hannah C. Harris
,
Alp Aydin
,
Gemma L. Kay
,
Thanh Le-Viet
,
Rachel Gilroy
,
Mark J. Pallen
,
Andrew J. Page
,
Justin O’Grady
,
Frederick J. Warren
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1038/s42003-022-03865-0
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1038/s42003-022-03865-0
Complex carbohydrates that escape small intestinal digestion, are broken down in the large intestine by enzymes encoded by the gut microbiome. This is a symbiotic relationship between microbes and host, resulting in metabolic products that influence host health and are exploited by other microbes. However, the role of carbohydrate structure in directing microbiota community composition and the succession of carbohydrate-degrading microbes, is not fully understood. In this study we evaluate species-level compositional variation within a single microbiome in response to six structurally distinct carbohydrates in a controlled model gut using hybrid metagenome assemblies. We identified 509 high-quality metagenome-assembled genomes (MAGs) belonging to ten bacterial classes and 28 bacterial families. Bacterial species identified as carrying genes encoding starch binding modules increased in abundance in response to starches. The use of hybrid metagenomics has allowed identification of several uncultured species with the functional potential to degrade starch substrates for future study.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1038/s42003-022-03865-0
- https://www.nature.com/articles/s42003-022-03865-0.pdf
- OA Status
- gold
- Cited By
- 17
- References
- 60
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4295079180
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4295079180Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1038/s42003-022-03865-0Digital Object Identifier
- Title
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Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiomeWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-09-08Full publication date if available
- Authors
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Anuradha Ravi, Perla Troncoso‐Rey, Jennifer Ahn‐Jarvis, Kendall R. Corbin, Suzanne Harris, Hannah C. Harris, Alp Aydin, Gemma L. Kay, Thanh Le-Viet, Rachel Gilroy, Mark J. Pallen, Andrew J. Page, Justin O’Grady, Frederick J. WarrenList of authors in order
- Landing page
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https://doi.org/10.1038/s42003-022-03865-0Publisher landing page
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https://www.nature.com/articles/s42003-022-03865-0.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.nature.com/articles/s42003-022-03865-0.pdfDirect OA link when available
- Concepts
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Metagenomics, Microbiome, Biology, Computational biology, Genome, Gut flora, Host (biology), Gene, Bacteria, Genetics, Evolutionary biology, BiochemistryTop concepts (fields/topics) attached by OpenAlex
- Cited by
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17Total citation count in OpenAlex
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2025: 6, 2024: 8, 2023: 2, 2022: 1Per-year citation counts (last 5 years)
- References (count)
-
60Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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