Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanus Article Swipe
César Toshio Facimoto
,
Kendall D. Clements
,
William Lindsey White
,
Kim M. Handley
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/ismeco/ycae102
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/ismeco/ycae102
The gut microbiota of the marine herbivorous fish Kyphosus sydneyanus are thought to play an important role in host nutrition by supplying short-chain fatty acids (SCFAs) through fermentation of dietary red and brown macroalgae. Here, using 645 metagenome-assembled genomes (MAGs) from wild fish, we determined the capacity of different bacterial taxa to degrade seaweed carbohydrates along the gut. Most bacteria (99%) were unclassified at the species level. Gut communities and CAZyme-related transcriptional activity were dominated by Bacteroidia and Clostridia. Both classes possess genes CAZymes acting on internal polysaccharide bonds, suggesting their role initiating glycan depolymerization, followed by rarer Gammaproteobacteria and Verrucomicrobiae. Results indicate that Bacteroidia utilize substrates in both brown and red algae, whereas other taxa, namely, Clostridia, Bacilli, and Verrucomicrobiae, utilize mainly brown algae. Bacteroidia had the highest CAZyme gene densities overall, and Alistipes were especially enriched in CAZyme gene clusters (n = 73 versus just 62 distributed across all other taxa), pointing to an enhanced capacity for macroalgal polysaccharide utilization (e.g., alginate, laminarin, and sulfated polysaccharides). Pairwise correlations of MAG relative abundances and encoded CAZyme compositions provide evidence of potential inter-species collaborations. Co-abundant MAGs exhibited complementary degradative capacities for specific substrates, and flexibility in their capacity to source carbon (e.g., glucose- or galactose-rich glycans), possibly facilitating coexistence via niche partitioning. Results indicate the potential for collaborative microbial carbohydrate metabolism in the K. sydneyanus gut, that a greater variety of taxa contribute to the breakdown of brown versus red dietary algae, and that Bacteroidia encompass specialized macroalgae degraders.
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- Language
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- Landing Page
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- https://academic.oup.com/ismecommun/advance-article-pdf/doi/10.1093/ismeco/ycae102/58713986/ycae102.pdf
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All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W4401206152Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/ismeco/ycae102Digital Object Identifier
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Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanusWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
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2024Year of publication
- Publication date
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2024-01-01Full publication date if available
- Authors
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César Toshio Facimoto, Kendall D. Clements, William Lindsey White, Kim M. HandleyList of authors in order
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https://doi.org/10.1093/ismeco/ycae102Publisher landing page
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https://academic.oup.com/ismecommun/advance-article-pdf/doi/10.1093/ismeco/ycae102/58713986/ycae102.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://academic.oup.com/ismecommun/advance-article-pdf/doi/10.1093/ismeco/ycae102/58713986/ycae102.pdfDirect OA link when available
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Hindgut, Clostridia, Fish
, Herbivore, Biology, Polysaccharide, Ecology, Food science, Fishery, Bacteria, Larva, Paleontology, Biochemistry, Midgut Top concepts (fields/topics) attached by OpenAlex - Cited by
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9Total citation count in OpenAlex
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2025: 8, 2024: 1Per-year citation counts (last 5 years)
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105Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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