IDBac: an open-access web platform and compendium for the identification of bacteria by MALDI-TOF mass spectrometry Article Swipe
Nyssa K. Krull
,
Michael Strobel
,
Julia Saulog
,
Liana Zaroubi
,
Bruno S. Paulo
,
Mandisa Timba
,
Danielle Braun
,
Gabrielle Mingolelli
,
Jessia Raherisoanjato
,
Robert A. Shepherd
,
Abigail F. Scott
,
C. Silva
,
Claire H. Fergusson
,
Z. Daniel
,
Sriya Pokharel
,
Sean B. Romanowski
,
Antonio Bencomo Hernández
,
Mónica Monge-Loría
,
Claire E. Dylla
,
Manasi M. Natu
,
Valentina Petukhova
,
Neha Garg
,
Paul R. Jensen
,
Adriana Blachowicz
,
Chelsi D. Cassilly
,
Lisa Guan
,
D. Cole Stevens
,
Jaclyn M. Winter
,
Shaun M. K. McKinnie
,
Barbara I. Adaikpoh
,
Skylar Carlson
,
E. McCauley
,
William W. Metcalf
,
Tim S. Bugni
,
Michael W. Mullowney
,
Eric G. Pamer
,
Matthew T. Henke
,
Hazel A. Barton
,
David Carter
,
Alessandra S. Eustáquio
,
Roger G. Linington
,
Laura M. Sanchez
,
Mingxun Wang
,
Brian T. Murphy
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1101/2025.10.15.682631
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1101/2025.10.15.682631
The identification of bacteria is central to the microbiological sciences. While gene sequencing methods have been the standard to identify bacteria, use of MALDI-TOF mass spectrometry (MS) in clinical microbiology provides high-throughput identification to the subspecies level. However, biotyping has yet to be adopted outside of clinical settings due to the lack of a centralized public database of MS protein signatures that would facilitate strain identification via spectral comparison. Herein we present the IDBac web platform, a crowd-sourced central knowledgebase of protein MS signatures of >1400 strains spanning 6 bacterial phyla. Accompanying the knowledgebase is analysis infrastructure to identify unknown isolates, probe relationships within culture collections, and visualize specialized metabolite differences within groups of closely related bacteria. We highlight this utility by demonstrating the dereplication of bacterial isolates using the seed knowledgebase, identifying trends in culture collections using metadata integration, and reporting the discovery of a new metabolite from a Paraburkholderia isolate.
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- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2025.10.15.682631
- https://www.biorxiv.org/content/biorxiv/early/2025/10/15/2025.10.15.682631.full.pdf
- OA Status
- green
- References
- 56
- OpenAlex ID
- https://openalex.org/W4415268940
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4415268940Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2025.10.15.682631Digital Object Identifier
- Title
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IDBac: an open-access web platform and compendium for the identification of bacteria by MALDI-TOF mass spectrometryWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
-
2025-10-15Full publication date if available
- Authors
-
Nyssa K. Krull, Michael Strobel, Julia Saulog, Liana Zaroubi, Bruno S. Paulo, Mandisa Timba, Danielle Braun, Gabrielle Mingolelli, Jessia Raherisoanjato, Robert A. Shepherd, Abigail F. Scott, C. Silva, Claire H. Fergusson, Z. Daniel, Sriya Pokharel, Sean B. Romanowski, Antonio Bencomo Hernández, Mónica Monge-Loría, Claire E. Dylla, Manasi M. Natu, Valentina Petukhova, Neha Garg, Paul R. Jensen, Adriana Blachowicz, Chelsi D. Cassilly, Lisa Guan, D. Cole Stevens, Jaclyn M. Winter, Shaun M. K. McKinnie, Barbara I. Adaikpoh, Skylar Carlson, E. McCauley, William W. Metcalf, Tim S. Bugni, Michael W. Mullowney, Eric G. Pamer, Matthew T. Henke, Hazel A. Barton, David Carter, Alessandra S. Eustáquio, Roger G. Linington, Laura M. Sanchez, Mingxun Wang, Brian T. MurphyList of authors in order
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https://doi.org/10.1101/2025.10.15.682631Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2025/10/15/2025.10.15.682631.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2025/10/15/2025.10.15.682631.full.pdfDirect OA link when available
- Cited by
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0Total citation count in OpenAlex
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