Identification of Article Swipe

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Honghui Yuan , LinLing Li , Cheng Hua , Xian Xiao , Shuiyuan Cheng ·

YOU? · · 2023 · Open Access · · DOI: https://doi.org/10.5376/pgt.2023.14.0005

AP2/ERF transcription factors (TF) are widely involved in the biological process of Ginkgo biloba , here, the ERF gene family may regulate plant stress responses through mediating secondary metabolism. To understand the regulation mechanisms of ERF gene family during this process, two transcriptome databases of ginkgo leaves under UV-B and drought stress were constructed respectively. The conserved domains, physicochemical properties and gene family homology of AP2/ERF TFs were analyzed using online bioinformatics tools, the expression of ERF gene family under these two adversity stresses were predicted and five ERF genes involved in flavonoid pathway were selected for qRT - PCR validation analysis. The results showed that 61 AP2/ERF TFs were identified from G. biloba , and which were classified into 28 GbERF, 23 GbDREB, 5 GbAP2, and 5 GbRAV, according to their conserved domains and motifs. The Amino acid numbers, isoelectric point (pI) and some other physicochemical properties varied greatly between different members. Sequence homology analysis with Arabidopsis thaliana and Glycine max showed that the members in the same AP2/ERF subfamily were closely related. In G. biloba , the GbERF and GbDREB subfamily together constitute the ERF gene family, transcriptome prediction analysis showed that the expression of most members of ERF gene family were increased under UV-B and drought stress. From the validation analysis, we concluded that the changes of the expression levels of these five genes were consistent with the prediction results. This study provided scientific basis for the function analysis of ERF gene family in G. biloba .

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Computational Biology

New Mutants

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Subfamily Gene Gene family Biology Transcriptome Genetics Ginkgo biloba Gene expression Homology (biology) Arabidopsis thaliana Computational biology Sequence analysis Mutant Botany

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Type: article
Language: en
Landing Page: https://doi.org/10.5376/pgt.2023.14.0005
PDF: https://genbreedpublisher.com/index.php/pgt/article/download/3957/3022
OA Status: diamond
References: 19
Related Works: 10
OpenAlex ID: https://openalex.org/W4366547550

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OpenAlex ID: https://openalex.org/W4366547550

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DOI: https://doi.org/10.5376/pgt.2023.14.0005

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Title: Identification of

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Type: article

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Language: en

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Publication year: 2023

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Publication date: 2023-01-01

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Authors: Honghui Yuan, LinLing Li, Cheng Hua, Xian Xiao, Shuiyuan Cheng

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Landing page: https://doi.org/10.5376/pgt.2023.14.0005

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Concepts: Subfamily, Gene, Gene family, Biology, Transcriptome, Genetics, Ginkgo biloba, Gene expression, Homology (biology), Arabidopsis thaliana, Computational biology, Sequence analysis, Mutant, Botany

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abstract_inverted_index.motifs.	130
abstract_inverted_index.process	10
abstract_inverted_index.results	99
abstract_inverted_index.stress.	202
abstract_inverted_index.through	25
abstract_inverted_index.Sequence	147
abstract_inverted_index.analysis	149, 184, 233
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abstract_inverted_index.domains,	56
abstract_inverted_index.function	232
abstract_inverted_index.homology	62, 148
abstract_inverted_index.involved	6, 89
abstract_inverted_index.members.	146
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abstract_inverted_index.process,	39
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abstract_inverted_index.results.	225
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abstract_inverted_index.stresses	82
abstract_inverted_index.thaliana	152
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abstract_inverted_index.according	124
abstract_inverted_index.adversity	81
abstract_inverted_index.analysis,	206
abstract_inverted_index.analysis.	97
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abstract_inverted_index.databases	42
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abstract_inverted_index.increased	197
abstract_inverted_index.mediating	26
abstract_inverted_index.predicted	84
abstract_inverted_index.responses	24
abstract_inverted_index.secondary	27
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abstract_inverted_index.consistent	221
abstract_inverted_index.constitute	177
abstract_inverted_index.expression	73, 188, 214
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abstract_inverted_index.mechanisms	32
abstract_inverted_index.prediction	183, 224
abstract_inverted_index.properties	58, 142
abstract_inverted_index.regulation	31
abstract_inverted_index.validation	96, 205
abstract_inverted_index.Arabidopsis	151
abstract_inverted_index.constructed	52
abstract_inverted_index.isoelectric	135
abstract_inverted_index.metabolism.	28
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abstract_inverted_index.respectively.	53
abstract_inverted_index.transcription	1
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abstract_inverted_index.GbERF, 23	117
abstract_inverted_index.bioinformatics	70
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cited_by_percentile_year
countries_distinct_count	1
institutions_distinct_count	5
citation_normalized_percentile.value	0.08899276
citation_normalized_percentile.is_in_top_1_percent	False
citation_normalized_percentile.is_in_top_10_percent	False