Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles Article Swipe
Xiaojuan Liu
,
Huihui Xu
,
Dan Yu
,
Quanxin Bi
,
Haiyan Yu
,
Libing Wang
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1186/s12870-022-03910-4
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.1186/s12870-022-03910-4
Background Apricot kernel, a woody oil tree species, is known for the high oil content of its almond that can be used as an ideal feedstock for biodiesel production. However, apricot kernel is vulnerable to spring frost, resulting in reduced or even no yield. There are no effective countermeasures in production, and the molecular mechanisms underlying freezing resistance are not well understood. Results We used transcriptome and hormone profiles to investigate differentially responsive hormones and their associated co-expression patterns of gene networks in the pistils of two apricot kernel cultivars with different cold resistances under freezing stress. The levels of auxin (IAA and ICA), cytokinin (IP and tZ), salicylic acid (SA) and jasmonic acid (JA and ILE-JA) were regulated differently, especially IAA between two cultivars, and external application of an IAA inhibitor and SA increased the spring frost resistance of the pistils of apricot kernels. We identified one gene network containing 65 hub genes highly correlated with IAA. Among these genes, three genes in auxin signaling pathway and three genes in brassinosteroid biosynthesis were identified. Moreover, some hub genes in this network showed a strong correlation such as protein kinases (PKs)-hormone related genes (HRGs), HRGs-HRGs and PKs-Ca 2+ related genes. Conclusions Ca 2+ , brassinosteroid and some regulators (such as PKs) may be involved in an auxin-mediated freezing response of apricot kernels. These findings add to our knowledge of the freezing response of apricot kernels and may provide new ideas for frost prevention measures and high cold–resistant apricot breeding.
Related Topics
Concepts
Biology
Brassinosteroid
Transcriptome
Auxin
Jasmonic acid
Gynoecium
Salicylic acid
Botany
Plant hormone
Gene
Cell biology
Gene expression
Genetics
Arabidopsis
Stamen
Mutant
Pollen
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1186/s12870-022-03910-4
- https://bmcplantbiol.biomedcentral.com/counter/pdf/10.1186/s12870-022-03910-4
- OA Status
- gold
- Cited By
- 3
- References
- 35
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4309223928
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4309223928Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1186/s12870-022-03910-4Digital Object Identifier
- Title
-
Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profilesWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-11-15Full publication date if available
- Authors
-
Xiaojuan Liu, Huihui Xu, Dan Yu, Quanxin Bi, Haiyan Yu, Libing WangList of authors in order
- Landing page
-
https://doi.org/10.1186/s12870-022-03910-4Publisher landing page
- PDF URL
-
https://bmcplantbiol.biomedcentral.com/counter/pdf/10.1186/s12870-022-03910-4Direct link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://bmcplantbiol.biomedcentral.com/counter/pdf/10.1186/s12870-022-03910-4Direct OA link when available
- Concepts
-
Biology, Brassinosteroid, Transcriptome, Auxin, Jasmonic acid, Gynoecium, Salicylic acid, Botany, Plant hormone, Gene, Cell biology, Gene expression, Genetics, Arabidopsis, Stamen, Mutant, PollenTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 1, 2024: 1, 2023: 1Per-year citation counts (last 5 years)
- References (count)
-
35Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.resistance | 58, 139 |
| abstract_inverted_index.responsive | 73 |
| abstract_inverted_index.underlying | 56 |
| abstract_inverted_index.vulnerable | 34 |
| abstract_inverted_index.Conclusions | 201 |
| abstract_inverted_index.application | 128 |
| abstract_inverted_index.correlation | 186 |
| abstract_inverted_index.identified. | 175 |
| abstract_inverted_index.investigate | 71 |
| abstract_inverted_index.production, | 51 |
| abstract_inverted_index.production. | 29 |
| abstract_inverted_index.resistances | 94 |
| abstract_inverted_index.understood. | 62 |
| abstract_inverted_index.biosynthesis | 173 |
| abstract_inverted_index.differently, | 120 |
| abstract_inverted_index.(PKs)-hormone | 191 |
| abstract_inverted_index.co-expression | 78 |
| abstract_inverted_index.transcriptome | 66 |
| abstract_inverted_index.auxin-mediated | 217 |
| abstract_inverted_index.differentially | 72 |
| abstract_inverted_index.brassinosteroid | 172, 205 |
| abstract_inverted_index.countermeasures | 49 |
| abstract_inverted_index.cold–resistant | 247 |
| cited_by_percentile_year.max | 95 |
| cited_by_percentile_year.min | 89 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 6 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/12 |
| sustainable_development_goals[0].score | 0.4300000071525574 |
| sustainable_development_goals[0].display_name | Responsible consumption and production |
| citation_normalized_percentile.value | 0.77210716 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |