Limnospira(Cyanobacteria) chemical fingerprint reveals local molecular adaptation Article Swipe
Théotime Roussel
,
Cédric Hubas
,
Sébastien Halary
,
Mathias Chynel
,
Charlotte Duval
,
Jean‐Paul Cadoret
,
Tarik Meziane
,
Léa Vernès
,
Claude Yéprémian
,
Cécile Bernard
,
Benjamin Marie
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1101/2024.04.19.590274
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1101/2024.04.19.590274
Limnospira can colonize a wide variety of environments ( e.g., freshwater, brackish, alkaline or alkaline-saline water) and develop dominant and even permanent blooms that limit over-shadowed adjacent phototrophs diversity, especially in alkaline and saline environments. Previous phylogenomic analysis of Limnospira allowed us to distinguish two major phylogenetic clades (I and II) but failed to clearly segregate strains according to their respective habitats in terms of salinity or biogeography. In the present work, we attempt to determine whether Limnospira displays metabolic signatures specific to its different habitats, particularly brackish or alkaline-saline ecosystems, and question the impact of accessory gene repertoires on respective chemical adaptations. The study of the metabolomic diversity of 93 strains of Limnospira from the Paris Museum Collection, grown under standardized lab culture conditions, showed clearly distinct chemical fingerprints that were correlated with the respective biogeographic origins of the strains. The molecules that most distinguish the different Limnospira geographic groups are sugars, lipids, peptides, photosynthetic pigments, and antioxidant molecules. Interestingly, these molecule enrichments might represent adaptation traits to the local conditions encountered in their respective sampling environments concerning salinity, light and oxidative stress. We hypothesize that within extreme environments, such as those colonized by Limnospira , a large set of flexible genes can provide remarkable adaptation to specific local environmental conditions ( e.g., salinity, light, and oxidative pressure). Thus, the occurrence within Limnospira population genomes of a specific set of flexible genes potentially involved in the production of certain metabolites may provide valuable adaptative traits that may support the bloom persistence beyond environmental condition variations. Importance Limnospira are ubiquitous cyanobacteria able to colonize and dominate a wide range of alkaline-saline environments around the world according to remarkable adaptative strategies. Phylogenomic analysis of Limnospira platensis allowed to distinguish two major phylogenetic clades (I and II) but failed to clearly segregate strains following their habitats in terms of salinity or biogeography. One can presume that the genes found within this variable portion of the genome of these clades could be involved in L. platensis adaptation to local environmental conditions. In the present paper, we attempt to determine whether Limnospira platensis displays metabolic signatures specific to its different habitats, particularly brackish or alkalinesaline ecosystems, and question the impact of accessory gene repertoire on respective chemical adaptation.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2024.04.19.590274
- https://www.biorxiv.org/content/biorxiv/early/2024/04/22/2024.04.19.590274.full.pdf
- OA Status
- green
- References
- 59
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4395011197
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4395011197Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2024.04.19.590274Digital Object Identifier
- Title
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Limnospira(Cyanobacteria) chemical fingerprint reveals local molecular adaptationWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2024Year of publication
- Publication date
-
2024-04-22Full publication date if available
- Authors
-
Théotime Roussel, Cédric Hubas, Sébastien Halary, Mathias Chynel, Charlotte Duval, Jean‐Paul Cadoret, Tarik Meziane, Léa Vernès, Claude Yéprémian, Cécile Bernard, Benjamin MarieList of authors in order
- Landing page
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https://doi.org/10.1101/2024.04.19.590274Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2024/04/22/2024.04.19.590274.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2024/04/22/2024.04.19.590274.full.pdfDirect OA link when available
- Concepts
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Cyanobacteria, Adaptation (eye), Fingerprint (computing), Local adaptation, Chemistry, Biology, Artificial intelligence, Computer science, Paleontology, Bacteria, Neuroscience, Sociology, Demography, PopulationTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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59Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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