Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design Article Swipe
Graham T. Holt
,
Jason Gorman
,
Siyu Wang
,
Anna U. Lowegard
,
Baoshan Zhang
,
Tracy Liu
,
Bob C. Lin
,
Mark K. Louder
,
Marcel S. Frenkel
,
Krisha McKee
,
Sijy O’Dell
,
Reda Rawi
,
Chen‐Hsiang Shen
,
Nicole A. Doria‐Rose
,
Peter D. Kwong
,
Bruce R. Donald
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.celrep.2023.112711
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1016/j.celrep.2023.112711
Broadly neutralizing antibodies (bNAbs) against HIV can reduce viral transmission in humans, but an effective therapeutic will require unusually high breadth and potency of neutralization. We employ the OSPREY computational protein design software to engineer variants of two apex-directed bNAbs, PGT145 and PG9RSH, resulting in increases in potency of over 100-fold against some viruses. The top designed variants improve neutralization breadth from 39% to 54% at clinically relevant concentrations (IC80 < 1 μg/mL) and improve median potency (IC80) by up to 4-fold over a cross-clade panel of 208 strains. To investigate the mechanisms of improvement, we determine cryoelectron microscopy structures of each variant in complex with the HIV envelope trimer. Surprisingly, we find the largest increases in breadth to be a result of optimizing side-chain interactions with highly variable epitope residues. These results provide insight into mechanisms of neutralization breadth and inform strategies for antibody design and improvement.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1016/j.celrep.2023.112711
- http://www.cell.com/article/S2211124723007222/pdf
- OA Status
- gold
- Cited By
- 11
- References
- 84
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4383877908
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4383877908Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1016/j.celrep.2023.112711Digital Object Identifier
- Title
-
Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico designWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2023Year of publication
- Publication date
-
2023-07-01Full publication date if available
- Authors
-
Graham T. Holt, Jason Gorman, Siyu Wang, Anna U. Lowegard, Baoshan Zhang, Tracy Liu, Bob C. Lin, Mark K. Louder, Marcel S. Frenkel, Krisha McKee, Sijy O’Dell, Reda Rawi, Chen‐Hsiang Shen, Nicole A. Doria‐Rose, Peter D. Kwong, Bruce R. DonaldList of authors in order
- Landing page
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https://doi.org/10.1016/j.celrep.2023.112711Publisher landing page
- PDF URL
-
https://www.cell.com/article/S2211124723007222/pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://www.cell.com/article/S2211124723007222/pdfDirect OA link when available
- Concepts
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Neutralization, In silico, Potency, Antibody, Apex (geometry), Human immunodeficiency virus (HIV), Virology, Computational biology, Chemistry, Biology, Immunology, Biochemistry, In vitro, Anatomy, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
11Total citation count in OpenAlex
- Citations by year (recent)
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2025: 5, 2024: 5, 2023: 1Per-year citation counts (last 5 years)
- References (count)
-
84Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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