Improving the discoverability of biodiversity data using the Global Names Finder Article Swipe
Anne Thessen
,
Dmitry Mozzherin
,
David Peter Shorthouse
,
David J. Patterson
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.3897/biss.6.90026
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.3897/biss.6.90026
The majority of biodiversity data is not findable, accessible, integratable, or reusable, partially because of a lack of metadata. Taxonomic names as metadata are useful, but not sufficient because these names may be updated as knowledge progresses. There is a great need for tools and services that can scale up to create and maintain metadata for the vast and varied long tail of dark data. Here we examine the use of GNFinder as a tool for creating and maintaining metadata using mentions of taxa in text from publications corresponding to data sets deposited in Dryad. Most studied taxa were mentioned in the publication using a properly formed scientific name, with a few exceptions for studies that only used vernacular names and only mentioned taxa in the corresponding files. GNFinder had a high F1 Score (0.86) representing a balance between precision (0.91) and recall (0.82). GNFinder had lower performance when a name string was an irregular abbreviation, had unexpected capitalization or punctuation, or contained a qualifier (like aff. or cf. ). Approximately 14% of the name strings identified in text published from 1996 to 2012 were outdated and updated to a current, valid name. Automated metadata creation and maintenance at scale using GNFinder can make it easier to find biodiversity publications as demonstrated by the Biodiversity Heritage Library and HathiTrust.
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- http://doi.org/10.3897/biss.6.90026
- https://biss.pensoft.net/article/90026/download/pdf/
- OA Status
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- Cited By
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- References
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All OpenAlex metadata
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https://openalex.org/W4304788959Canonical identifier for this work in OpenAlex
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https://doi.org/10.3897/biss.6.90026Digital Object Identifier
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Improving the discoverability of biodiversity data using the Global Names FinderWork title
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articleOpenAlex work type
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enPrimary language
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2022Year of publication
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2022-10-12Full publication date if available
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Anne Thessen, Dmitry Mozzherin, David Peter Shorthouse, David J. PattersonList of authors in order
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https://doi.org/10.3897/biss.6.90026Publisher landing page
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diamondOpen access status per OpenAlex
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Discoverability, Metadata, Computer science, Information retrieval, Metadata repository, Punctuation, Biodiversity, World Wide Web, Taxon, Biology, Ecology, Artificial intelligenceTop concepts (fields/topics) attached by OpenAlex
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4Total citation count in OpenAlex
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2024: 1, 2023: 3Per-year citation counts (last 5 years)
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