Inbreeding patterns and genetic diversity under selection in Teha sheep Article Swipe
YOU?
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· 2025
· Open Access
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· DOI: https://doi.org/10.3389/fgene.2025.1576125
Background Inbreeding and genetic diversity are critical factors influencing the adaptability, productivity, and sustainability of livestock populations. Teha sheep, a crossbred line between Texel and Kazakh sheep, are an important meat-producing breed in China, yet their genetic structure and inbreeding status remain underexplored. In this study, we aim to evaluate inbreeding coefficients, genetic diversity, and selection signatures in Teha sheep by integrating pedigree and genomic data. Results Analysis of pedigree data from 2,652 individuals revealed a low inbreeding coefficient (FPED = 0.001), whereas analysis of genomic data from 1,271 individuals indicated slightly higher inbreeding coefficients, with the FROH averaging 0.044. Genetic diversity metrics, including Ho = 0.347 and PIC = 0.345, confirmed moderate variability within the population. A significant region of runs of homozygosity (ROH) hotspot was identified on chromosome 2 (112.01–119.89 Mb), encompassing genes such as MSTN , TUBGCP5 , and NIPA2 , which are associated with muscle growth, fat metabolism, and skeletal development. Notably, CYFIP1 , SAP130 , and UGGT1 were identified as key genes shared across ROH hotspots, QTL regions, and LD blocks, implicating their roles in growth efficiency, carcass quality, and protein regulation under stress. These findings reveal critical genomic regions contributing to the breed’s productivity and adaptability. Conclusion In this study, we highlight the low inbreeding levels and moderate genetic diversity of Teha sheep, emphasizing the integration of pedigree and genomic analyses for sustainable breeding programs. The identification of key genes provides a foundation for optimizing productivity and maintaining genetic variability in this important livestock population.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3389/fgene.2025.1576125
- https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2025.1576125/pdf
- OA Status
- gold
- References
- 36
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4411706413
Raw OpenAlex JSON
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https://openalex.org/W4411706413Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.3389/fgene.2025.1576125Digital Object Identifier
- Title
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Inbreeding patterns and genetic diversity under selection in Teha sheepWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-06-27Full publication date if available
- Authors
-
Sen Wang, Long Liang, Dilinigeer Ziyayiding, Wenjing Jiao, Hailati Kasimu, Sangang He, Mingjun LiuList of authors in order
- Landing page
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https://doi.org/10.3389/fgene.2025.1576125Publisher landing page
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https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2025.1576125/pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2025.1576125/pdfDirect OA link when available
- Concepts
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Inbreeding, Biology, Runs of Homozygosity, Genetic diversity, Breed, Population, Genetic variation, Livestock, Genetics, Adaptability, Evolutionary biology, Gene, Genotype, Ecology, Single-nucleotide polymorphism, Demography, SociologyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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0Total citation count in OpenAlex
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36Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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