Inference and Validation of the Structure of Lotka-Volterra Models Article Swipe
Eberhard O. Voit
,
Jacob D. Davis
,
Daniel V. Olivença
·
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1101/2021.08.14.456346
YOU?
·
· 2021
· Open Access
·
· DOI: https://doi.org/10.1101/2021.08.14.456346
For close to a century, Lotka-Volterra (LV) models have been used to investigate interactions among populations of different species. For a few species, these investigations are straightforward. However, with the arrival of large and complex microbiomes, unprecedently rich data have become available and await analysis. In particular, these data require us to ask which microbial populations of a mixed community affect other populations, whether these influences are activating or inhibiting and how the interactions change over time. Here we present two new inference strategies for interaction parameters that are based on a new algebraic LV inference (ALVI) method. One strategy uses different survivor profiles of communities grown under similar conditions, while the other pertains to time series data. In addition, we address the question of whether observation data are compliant with the LV structure or require a richer modeling format. The code and data used in this manuscript are available at “ https://github.com/LBSA-VoitLab/Inference_and_Validation_of_the_Structure_of_Lotka_Volterra_Models “.
Related Topics
Concepts
Inference
Computer science
Volterra equations
Code (set theory)
Algebraic structure
Series (stratigraphy)
Theoretical computer science
Data mining
Data science
Machine learning
Artificial intelligence
Mathematics
Biology
Programming language
Nonlinear system
Physics
Set (abstract data type)
Quantum mechanics
Paleontology
Pure mathematics
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2021.08.14.456346
- https://www.biorxiv.org/content/biorxiv/early/2021/08/15/2021.08.14.456346.full.pdf
- OA Status
- green
- Cited By
- 7
- References
- 62
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3196151817
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W3196151817Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2021.08.14.456346Digital Object Identifier
- Title
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Inference and Validation of the Structure of Lotka-Volterra ModelsWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2021Year of publication
- Publication date
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2021-08-15Full publication date if available
- Authors
-
Eberhard O. Voit, Jacob D. Davis, Daniel V. OlivençaList of authors in order
- Landing page
-
https://doi.org/10.1101/2021.08.14.456346Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2021/08/15/2021.08.14.456346.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2021/08/15/2021.08.14.456346.full.pdfDirect OA link when available
- Concepts
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Inference, Computer science, Volterra equations, Code (set theory), Algebraic structure, Series (stratigraphy), Theoretical computer science, Data mining, Data science, Machine learning, Artificial intelligence, Mathematics, Biology, Programming language, Nonlinear system, Physics, Set (abstract data type), Quantum mechanics, Paleontology, Pure mathematicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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7Total citation count in OpenAlex
- Citations by year (recent)
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2025: 1, 2023: 1, 2022: 4, 2021: 1Per-year citation counts (last 5 years)
- References (count)
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62Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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