Integrated mRNA and miRNA Transcriptome Analysis Suggests a Regulatory Network for UV–B-Controlled Terpenoid Synthesis in Fragrant Woodfern (Dryopteris fragrans) Article Swipe
Chunhua Song
,
Yalin Guan
,
Dongrui Zhang
,
Xun Tang
,
Ying Chang
·
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.3390/ijms23105708
YOU?
·
· 2022
· Open Access
·
· DOI: https://doi.org/10.3390/ijms23105708
Fragrant woodfern (Dryopteris fragrans) is a medicinal plant rich in terpenoids. Ultraviolet-B (UV–B) light could increase concentration of terpenoids. The aim of this study was to analyze how UV–B regulates the terpenoid synthesis of the molecular regulatory mechanism in fragrant woodfern. In this study, compared with the control group, the content of the terpenes was significantly higher in fragrant woodfern leaves under UV–B treatment for 4 days (d). In order to identify how UV–B regulates the terpenoid metabolic mechanism in fragrant woodfern, we examined the mRNAs and small RNAs in fragrant woodfern leaves under UV–B treatment. mRNA and miRNA–seq identified 4533 DEGs and 17 DEMs in the control group compared with fragrant woodfern leaves under UV–B treatment for 4 d. mRNA–miRNA analysis identified miRNA target gene pairs consisting of 8 DEMs and 115 miRNAs. The target genes were subjected to GO and KEGG analyses. The results showed that the target genes were mainly enriched in diterpene biosynthesis, terpenoid backbone biosynthesis, plant hormone signal transduction, MEP pathway and MVA pathway, in which miR156 and miR160 regulate these pathways by targeting DfSPL and DfARF, respectively. The mRNA and miRNA datasets identified a subset of candidate genes. It provides the theoretical basis that UV–B regulates the terpenoid synthesis of the molecular regulatory mechanism in fragrant woodfern.
Related Topics
Concepts
Terpenoid
Biology
KEGG
microRNA
Transcriptome
Messenger RNA
Biosynthesis
Metabolic pathway
Terpene
Gene
Biochemistry
Gene expression
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.3390/ijms23105708
- https://www.mdpi.com/1422-0067/23/10/5708/pdf?version=1653033674
- OA Status
- gold
- Cited By
- 20
- References
- 66
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4282934631
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4282934631Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.3390/ijms23105708Digital Object Identifier
- Title
-
Integrated mRNA and miRNA Transcriptome Analysis Suggests a Regulatory Network for UV–B-Controlled Terpenoid Synthesis in Fragrant Woodfern (Dryopteris fragrans)Work title
- Type
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articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2022Year of publication
- Publication date
-
2022-05-20Full publication date if available
- Authors
-
Chunhua Song, Yalin Guan, Dongrui Zhang, Xun Tang, Ying ChangList of authors in order
- Landing page
-
https://doi.org/10.3390/ijms23105708Publisher landing page
- PDF URL
-
https://www.mdpi.com/1422-0067/23/10/5708/pdf?version=1653033674Direct link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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goldOpen access status per OpenAlex
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https://www.mdpi.com/1422-0067/23/10/5708/pdf?version=1653033674Direct OA link when available
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Terpenoid, Biology, KEGG, microRNA, Transcriptome, Messenger RNA, Biosynthesis, Metabolic pathway, Terpene, Gene, Biochemistry, Gene expressionTop concepts (fields/topics) attached by OpenAlex
- Cited by
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20Total citation count in OpenAlex
- Citations by year (recent)
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2025: 8, 2024: 7, 2023: 4, 2022: 1Per-year citation counts (last 5 years)
- References (count)
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66Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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