Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz Article Swipe
Justin Wagner
,
Jayaram Kancherla
,
Domenick J. Braccia
,
James Matsumara
,
Victor Felix
,
Jonathan Crabtree
,
Anup Mahurkar
,
Héctor Corrada Bravo
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.12688/f1000research.24345.1
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.12688/f1000research.24345.1
The rich data produced by the second phase of the Human Microbiome Project (iHMP) offers a unique opportunity to test hypotheses that interactions between microbial communities and a human host might impact an individual’s health or disease status. In this work we describe infrastructure that integrates Metaviz, an interactive microbiome data analysis and visualization tool, with the iHMP Data Coordination Center web portal and the HMP2Data R/Bioconductor package. We describe integrative statistical and visual analyses of two datasets from iHMP using Metaviz along with the metagenomeSeq R/Bioconductor package for statistical analysis of differential abundance analysis. These use cases demonstrate the utility of a combined approach to access and analyze data from this resource.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.12688/f1000research.24345.1
- https://f1000research.com/articles/9-601/v1/pdf
- OA Status
- gold
- Cited By
- 2
- References
- 20
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3174761044
All OpenAlex metadata
Raw OpenAlex JSON
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https://openalex.org/W3174761044Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.12688/f1000research.24345.1Digital Object Identifier
- Title
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Interactive exploratory data analysis of Integrative Human Microbiome Project data using MetavizWork title
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2020Year of publication
- Publication date
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2020-06-12Full publication date if available
- Authors
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Justin Wagner, Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada BravoList of authors in order
- Landing page
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https://doi.org/10.12688/f1000research.24345.1Publisher landing page
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https://f1000research.com/articles/9-601/v1/pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://f1000research.com/articles/9-601/v1/pdfDirect OA link when available
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Open peer review, Microbiome, Human Microbiome Project, Plant biology, Physiology, Open data, Computational biology, Data science, Medicine, Neuroscience, Biology, Bioinformatics, Human microbiome, Computer science, World Wide Web, BotanyTop concepts (fields/topics) attached by OpenAlex
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2Total citation count in OpenAlex
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2024: 1, 2023: 1Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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