Intrinsically disordered regions regulate RhlE RNA helicase functions in bacteria Article Swipe
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· 2024
· Open Access
·
· DOI: https://doi.org/10.1093/nar/gkae511
RNA helicases—central enzymes in RNA metabolism—often feature intrinsically disordered regions (IDRs) that enable phase separation and complex molecular interactions. In the bacterial pathogen Pseudomonas aeruginosa, the non-redundant RhlE1 and RhlE2 RNA helicases share a conserved REC catalytic core but differ in C-terminal IDRs. Here, we show how the IDR diversity defines RhlE RNA helicase specificity of function. Both IDRs facilitate RNA binding and phase separation, localizing proteins in cytoplasmic clusters. However, RhlE2 IDR is more efficient in enhancing REC core RNA unwinding, exhibits a greater tendency for phase separation, and interacts with the RNase E endonuclease, a crucial player in mRNA degradation. Swapping IDRs results in chimeric proteins that are biochemically active but functionally distinct as compared to their native counterparts. The RECRhlE1-IDRRhlE2 chimera improves cold growth of a rhlE1 mutant, gains interaction with RNase E and affects a subset of both RhlE1 and RhlE2 RNA targets. The RECRhlE2-IDRRhlE1 chimera instead hampers bacterial growth at low temperatures in the absence of RhlE1, with its detrimental effect linked to aberrant RNA droplets. By showing that IDRs modulate both protein core activities and subcellular localization, our study defines the impact of IDR diversity on the functional differentiation of RNA helicases.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/nar/gkae511
- https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae511/58234502/gkae511.pdf
- OA Status
- gold
- Cited By
- 5
- References
- 79
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4399671295
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4399671295Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/nar/gkae511Digital Object Identifier
- Title
-
Intrinsically disordered regions regulate RhlE RNA helicase functions in bacteriaWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-06-03Full publication date if available
- Authors
-
Stéphane Hausmann, Johan Geiser, George E. Allen, Sandra Amandine Marie Geslain, Martina ValentiniList of authors in order
- Landing page
-
https://doi.org/10.1093/nar/gkae511Publisher landing page
- PDF URL
-
https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae511/58234502/gkae511.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
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-
https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkae511/58234502/gkae511.pdfDirect OA link when available
- Concepts
-
Biology, Helicase, RNA, RNase P, Exosome complex, RNA Helicase A, Degradosome, RNA silencing, RNA-binding protein, Cell biology, Non-coding RNA, Riboswitch, Genetics, Gene, RNA interferenceTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
5Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 4, 2024: 1Per-year citation counts (last 5 years)
- References (count)
-
79Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.non-redundant | 27 |
| abstract_inverted_index.differentiation | 195 |
| abstract_inverted_index.RECRhlE1-IDRRhlE2 | 123 |
| abstract_inverted_index.RECRhlE2-IDRRhlE1 | 149 |
| abstract_inverted_index.metabolism—often | 6 |
| abstract_inverted_index.helicases—central | 2 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 90 |
| corresponding_author_ids | https://openalex.org/A5035393865 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 5 |
| corresponding_institution_ids | https://openalex.org/I114457229 |
| citation_normalized_percentile.value | 0.8287151 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |