reformatting functionalities Article Swipe

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Pierre Lindenbaum , Matilde Karakachoff , Richard Redon ·

YOU? · · 2017 · Open Access · · DOI: https://doi.org/10.1101/120196

Motivation Visualizing BAM and VCF files is a common task for biologists, but they’re missing a way to filter and to explore the details of each short-read or variation. Results In that context, we wrote an interactive java-based interface named JfxNgs that uses javascript snippets to filter and reformat BAM and VCF files. Availability https://github.com/lindenb/jvarkit/blob/master/docs/JfxNgs.md Contact [email protected] .

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Computer Science

Java (Programming Language)

Programming Language

Artificial Intelligence

Human–Computer Interaction

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JavaScript Computer science Java Task (project management) Context (archaeology) Filter (signal processing) Interface (matter) World Wide Web Programming language Artificial intelligence Human–computer interaction Computer vision Operating system Engineering Bubble Maximum bubble pressure method Paleontology Systems engineering Biology

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Type: preprint
Language: en
Landing Page: https://doi.org/10.1101/120196
PDF: https://www.biorxiv.org/content/biorxiv/early/2017/03/24/120196.full.pdf
OA Status: green
Cited By: 1
References: 7
Related Works: 10
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DOI: https://doi.org/10.1101/120196

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Title: JfxNgs: A BAM/VCF viewer with javascript-based filtering/reformatting functionalities

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Type: preprint

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Language: en

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Publication year: 2017

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Publication date: 2017-03-24

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Authors: Pierre Lindenbaum, Matilde Karakachoff, Richard Redon

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Landing page: https://doi.org/10.1101/120196

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Concepts: JavaScript, Computer science, Java, Task (project management), Context (archaeology), Filter (signal processing), Interface (matter), World Wide Web, Programming language, Artificial intelligence, Human–computer interaction, Computer vision, Operating system, Engineering, Bubble, Maximum bubble pressure method, Paleontology, Systems engineering, Biology

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Cited by: 1

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