Lung tumor-infiltrating Treghave divergent transcriptional profiles and function linked to checkpoint blockade response Article Swipe
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· 2022
· Open Access
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· DOI: https://doi.org/10.1101/2022.12.13.520329
Regulatory T cells (T reg ) are conventionally viewed to suppress endogenous and therapyinduced anti-tumor immunity; however, their role in modulating responses to immune checkpoint blockade (ICB) is unclear. In this study, we integrated single-cell RNAseq/TCRseq of >73,000 tumor-infiltrating T reg (TIL-T reg ) from anti-PD-1-treated and treatment naive non-small cell lung cancers (NSCLC) with single cell analysis of tumor-associated antigen (TAA)-specific T reg derived from a murine tumor model. We identified 10 subsets of human TIL-T reg , most of which have high concordance with murine TIL-T reg subsets. Notably, one subset selectively expresses high levels of OX40 and GITR, whose engangement by cognate ligand mediated proliferative programs and NF-kB activation, as well as multiple genes involved in T reg suppression, in particular LAG3. Functionally, the OX40 hi GITR hi subset in the most highly suppressive ex vivo and T reg expression of OX40, GITR and LAG3, correlated with resistance to PD-1 blockade. Surprisingly, in the murine tumor model, we found that virtually all TIL-T reg expressing T cell receptors that are specific for TAA fully develop a distinct Th1-like signature over a two-week period after entry into the tumor, down-regulating FoxP3 and up-regulating expression of TBX21 ( Tbet), IFNγ and certain pro-inflammatory granzymes. Application of a gene score from the murine TAA-specific Th1-like T reg subset to the human single-cell dataset revealed a highly analogous subcluster that was enriched in anti-PD-1 responding tumors. These findings demonstrate that TIL-T reg partition into multiple distinct transcriptionally-defined subsets with potentially opposing effects on ICB-induced anti-tumor immunity and suggest that TAA-specific TIL-T reg may positively contribute to anti-tumor responses. One-Sentence Summary We define 10 subsets of lung cancer-infiltrating regulatory T cells, one of which is highly suppressive and enriched in anti-PD-1 non-responders and the other is Th1-like and is enriched in PD-1 responders.
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- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2022.12.13.520329
- https://www.biorxiv.org/content/biorxiv/early/2022/12/15/2022.12.13.520329.full.pdf
- OA Status
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- References
- 77
- Related Works
- 10
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https://openalex.org/W4311820175Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2022.12.13.520329Digital Object Identifier
- Title
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Lung tumor-infiltrating Treghave divergent transcriptional profiles and function linked to checkpoint blockade responseWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2022Year of publication
- Publication date
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2022-12-15Full publication date if available
- Authors
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Arbor G. Dykema, Jiajia Zhang, Boyang Zhang, Laurene S. Cheung, Zhen Zeng, Christopher Cherry, Taibo Li, Justina X. Caushi, Marni Nishimoto, Sydney Connor, Zhicheng Ji, Andrew J. Munoz, Wenpin Hou, Wentao Zhan, Dipika Singh, Rufiaat Rashid, Marisa Mitchell-Flack, Sadhana Bom, Ada Tam, Nick Ionta, Yi Wang, Camille A. Sawosik, Lauren E. Tirado, Luke M. Tomasovic, Derek VanDyke, Jamie B. Spangler, Valsamo Anagnostou, Stephen C. Yang, Jonathan Spicer, Roni Rayes, Janis M. Taube, Julie R. Brahmer, Patrick M. Forde, Srinivasan Yegnasubramanian, Hongkai Ji, Drew M. Pardoll, Kellie N. SmithList of authors in order
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https://doi.org/10.1101/2022.12.13.520329Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2022/12/15/2022.12.13.520329.full.pdfDirect link to full text PDF
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2022/12/15/2022.12.13.520329.full.pdfDirect OA link when available
- Concepts
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FOXP3, Cancer research, T cell, Immune checkpoint, Biology, Tumor-infiltrating lymphocytes, Blockade, Immune system, Tumor microenvironment, Immunotherapy, Immunology, Receptor, GeneticsTop concepts (fields/topics) attached by OpenAlex
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.identified | 72 |
| abstract_inverted_index.integrated | 34 |
| abstract_inverted_index.modulating | 21 |
| abstract_inverted_index.particular | 124 |
| abstract_inverted_index.positively | 263 |
| abstract_inverted_index.regulatory | 277 |
| abstract_inverted_index.resistance | 151 |
| abstract_inverted_index.responding | 234 |
| abstract_inverted_index.responses. | 267 |
| abstract_inverted_index.subcluster | 228 |
| abstract_inverted_index.Application | 206 |
| abstract_inverted_index.ICB-induced | 253 |
| abstract_inverted_index.activation, | 112 |
| abstract_inverted_index.concordance | 85 |
| abstract_inverted_index.demonstrate | 238 |
| abstract_inverted_index.engangement | 103 |
| abstract_inverted_index.potentially | 249 |
| abstract_inverted_index.responders. | 301 |
| abstract_inverted_index.selectively | 94 |
| abstract_inverted_index.single-cell | 35, 222 |
| abstract_inverted_index.suppressive | 137, 285 |
| abstract_inverted_index.One-Sentence | 268 |
| abstract_inverted_index.TAA-specific | 214, 259 |
| abstract_inverted_index.suppression, | 122 |
| abstract_inverted_index.Functionally, | 126 |
| abstract_inverted_index.RNAseq/TCRseq | 36 |
| abstract_inverted_index.Surprisingly, | 155 |
| abstract_inverted_index.proliferative | 108 |
| abstract_inverted_index.up-regulating | 195 |
| abstract_inverted_index.(TAA)-specific | 62 |
| abstract_inverted_index.conventionally | 8 |
| abstract_inverted_index.non-responders | 290 |
| abstract_inverted_index.therapyinduced | 14 |
| abstract_inverted_index.down-regulating | 192 |
| abstract_inverted_index.pro-inflammatory | 204 |
| abstract_inverted_index.tumor-associated | 60 |
| abstract_inverted_index.anti-PD-1-treated | 46 |
| abstract_inverted_index.tumor-infiltrating | 39 |
| abstract_inverted_index.cancer-infiltrating | 276 |
| abstract_inverted_index.transcriptionally-defined | 246 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5082613510 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 37 |
| corresponding_institution_ids | https://openalex.org/I1299907687, https://openalex.org/I2802640032, https://openalex.org/I4210164401 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[0].score | 0.8199999928474426 |
| sustainable_development_goals[0].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.27001166 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |