Marigold: a machine learning-based web app for zebrafish pose tracking Article Swipe
Gregory Teicher
,
R. Madison Riffe
,
Wayne Barnaby
,
Gabrielle Martin
,
B. E. Clayton
,
Josef G. Trapani
,
Gerald B. Downes
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1186/s12859-025-06042-2
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1186/s12859-025-06042-2
Related Topics
Concepts
Computer science
Software
Graphical user interface
Interface (matter)
Zebrafish
Feature (linguistics)
Tracing
Inference
Artificial intelligence
User interface
Artificial neural network
Human–computer interaction
Computational biology
Machine learning
Biology
Operating system
Gene
Genetics
Maximum bubble pressure method
Linguistics
Philosophy
Bubble
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1186/s12859-025-06042-2
- OA Status
- gold
- References
- 98
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4406916493
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W4406916493Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1186/s12859-025-06042-2Digital Object Identifier
- Title
-
Marigold: a machine learning-based web app for zebrafish pose trackingWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2025Year of publication
- Publication date
-
2025-01-28Full publication date if available
- Authors
-
Gregory Teicher, R. Madison Riffe, Wayne Barnaby, Gabrielle Martin, B. E. Clayton, Josef G. Trapani, Gerald B. DownesList of authors in order
- Landing page
-
https://doi.org/10.1186/s12859-025-06042-2Publisher landing page
- Open access
-
YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
-
https://doi.org/10.1186/s12859-025-06042-2Direct OA link when available
- Concepts
-
Computer science, Software, Graphical user interface, Interface (matter), Zebrafish, Feature (linguistics), Tracing, Inference, Artificial intelligence, User interface, Artificial neural network, Human–computer interaction, Computational biology, Machine learning, Biology, Operating system, Gene, Genetics, Maximum bubble pressure method, Linguistics, Philosophy, BubbleTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
0Total citation count in OpenAlex
- References (count)
-
98Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W4406916493 |
|---|---|
| doi | https://doi.org/10.1186/s12859-025-06042-2 |
| ids.doi | https://doi.org/10.1186/s12859-025-06042-2 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/39875867 |
| ids.openalex | https://openalex.org/W4406916493 |
| fwci | 0.0 |
| mesh[0].qualifier_ui | |
| mesh[0].descriptor_ui | D015027 |
| mesh[0].is_major_topic | True |
| mesh[0].qualifier_name | |
| mesh[0].descriptor_name | Zebrafish |
| mesh[1].qualifier_ui | |
| mesh[1].descriptor_ui | D000818 |
| mesh[1].is_major_topic | False |
| mesh[1].qualifier_name | |
| mesh[1].descriptor_name | Animals |
| mesh[2].qualifier_ui | |
| mesh[2].descriptor_ui | D000069550 |
| mesh[2].is_major_topic | True |
| mesh[2].qualifier_name | |
| mesh[2].descriptor_name | Machine Learning |
| mesh[3].qualifier_ui | |
| mesh[3].descriptor_ui | D012984 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | |
| mesh[3].descriptor_name | Software |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D001522 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Behavior, Animal |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D014584 |
| mesh[5].is_major_topic | False |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | User-Computer Interface |
| mesh[6].qualifier_ui | |
| mesh[6].descriptor_ui | D020407 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | |
| mesh[6].descriptor_name | Internet |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D004625 |
| mesh[7].is_major_topic | False |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | Embryo, Nonmammalian |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D007814 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Larva |
| mesh[9].qualifier_ui | Q000502 |
| mesh[9].descriptor_ui | D015027 |
| mesh[9].is_major_topic | True |
| mesh[9].qualifier_name | physiology |
| mesh[9].descriptor_name | Zebrafish |
| mesh[10].qualifier_ui | |
| mesh[10].descriptor_ui | D000818 |
| mesh[10].is_major_topic | False |
| mesh[10].qualifier_name | |
| mesh[10].descriptor_name | Animals |
| mesh[11].qualifier_ui | |
| mesh[11].descriptor_ui | D000069550 |
| mesh[11].is_major_topic | True |
| mesh[11].qualifier_name | |
| mesh[11].descriptor_name | Machine Learning |
| mesh[12].qualifier_ui | |
| mesh[12].descriptor_ui | D001522 |
| mesh[12].is_major_topic | True |
| mesh[12].qualifier_name | |
| mesh[12].descriptor_name | Behavior, Animal |
| mesh[13].qualifier_ui | |
| mesh[13].descriptor_ui | D012984 |
| mesh[13].is_major_topic | True |
| mesh[13].qualifier_name | |
| mesh[13].descriptor_name | Software |
| mesh[14].qualifier_ui | |
| mesh[14].descriptor_ui | D020407 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | |
| mesh[14].descriptor_name | Internet |
| mesh[15].qualifier_ui | |
| mesh[15].descriptor_ui | D014584 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | |
| mesh[15].descriptor_name | User-Computer Interface |
| mesh[16].qualifier_ui | Q000502 |
| mesh[16].descriptor_ui | D007814 |
| mesh[16].is_major_topic | False |
| mesh[16].qualifier_name | physiology |
| mesh[16].descriptor_name | Larva |
| mesh[17].qualifier_ui | |
| mesh[17].descriptor_ui | D015027 |
| mesh[17].is_major_topic | True |
| mesh[17].qualifier_name | |
| mesh[17].descriptor_name | Zebrafish |
| mesh[18].qualifier_ui | |
| mesh[18].descriptor_ui | D000818 |
| mesh[18].is_major_topic | False |
| mesh[18].qualifier_name | |
| mesh[18].descriptor_name | Animals |
| mesh[19].qualifier_ui | |
| mesh[19].descriptor_ui | D000069550 |
| mesh[19].is_major_topic | True |
| mesh[19].qualifier_name | |
| mesh[19].descriptor_name | Machine Learning |
| mesh[20].qualifier_ui | |
| mesh[20].descriptor_ui | D012984 |
| mesh[20].is_major_topic | False |
| mesh[20].qualifier_name | |
| mesh[20].descriptor_name | Software |
| mesh[21].qualifier_ui | |
| mesh[21].descriptor_ui | D001522 |
| mesh[21].is_major_topic | False |
| mesh[21].qualifier_name | |
| mesh[21].descriptor_name | Behavior, Animal |
| mesh[22].qualifier_ui | |
| mesh[22].descriptor_ui | D014584 |
| mesh[22].is_major_topic | False |
| mesh[22].qualifier_name | |
| mesh[22].descriptor_name | User-Computer Interface |
| mesh[23].qualifier_ui | |
| mesh[23].descriptor_ui | D020407 |
| mesh[23].is_major_topic | False |
| mesh[23].qualifier_name | |
| mesh[23].descriptor_name | Internet |
| mesh[24].qualifier_ui | |
| mesh[24].descriptor_ui | D004625 |
| mesh[24].is_major_topic | False |
| mesh[24].qualifier_name | |
| mesh[24].descriptor_name | Embryo, Nonmammalian |
| mesh[25].qualifier_ui | |
| mesh[25].descriptor_ui | D007814 |
| mesh[25].is_major_topic | False |
| mesh[25].qualifier_name | |
| mesh[25].descriptor_name | Larva |
| type | article |
| title | Marigold: a machine learning-based web app for zebrafish pose tracking |
| awards[0].id | https://openalex.org/G2439547409 |
| awards[0].funder_id | https://openalex.org/F4320306076 |
| awards[0].display_name | |
| awards[0].funder_award_id | IOS 1456866 |
| awards[0].funder_display_name | National Science Foundation |
| awards[1].id | https://openalex.org/G1186599608 |
| awards[1].funder_id | https://openalex.org/F4320306597 |
| awards[1].display_name | |
| awards[1].funder_award_id | AES2017SD |
| awards[1].funder_display_name | American Epilepsy Society |
| biblio.issue | 1 |
| biblio.volume | 26 |
| biblio.last_page | 30 |
| biblio.first_page | 30 |
| grants[0].funder | https://openalex.org/F4320306076 |
| grants[0].award_id | IOS 1456866 |
| grants[0].funder_display_name | National Science Foundation |
| grants[1].funder | https://openalex.org/F4320306076 |
| grants[1].award_id | IOS 1456866 |
| grants[1].funder_display_name | National Science Foundation |
| grants[2].funder | https://openalex.org/F4320306597 |
| grants[2].award_id | AES2017SD |
| grants[2].funder_display_name | American Epilepsy Society |
| topics[0].id | https://openalex.org/T11685 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9998999834060669 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1307 |
| topics[0].subfield.display_name | Cell Biology |
| topics[0].display_name | Zebrafish Biomedical Research Applications |
| topics[1].id | https://openalex.org/T11184 |
| topics[1].field.id | https://openalex.org/fields/27 |
| topics[1].field.display_name | Medicine |
| topics[1].score | 0.920199990272522 |
| topics[1].domain.id | https://openalex.org/domains/4 |
| topics[1].domain.display_name | Health Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/2735 |
| topics[1].subfield.display_name | Pediatrics, Perinatology and Child Health |
| topics[1].display_name | Neonatal and fetal brain pathology |
| funders[0].id | https://openalex.org/F4320306076 |
| funders[0].ror | https://ror.org/021nxhr62 |
| funders[0].display_name | National Science Foundation |
| funders[1].id | https://openalex.org/F4320306597 |
| funders[1].ror | https://ror.org/01sx4nq39 |
| funders[1].display_name | American Epilepsy Society |
| is_xpac | False |
| apc_list.value | 1690 |
| apc_list.currency | GBP |
| apc_list.value_usd | 2072 |
| apc_paid.value | 1690 |
| apc_paid.currency | GBP |
| apc_paid.value_usd | 2072 |
| concepts[0].id | https://openalex.org/C41008148 |
| concepts[0].level | 0 |
| concepts[0].score | 0.6799014210700989 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[0].display_name | Computer science |
| concepts[1].id | https://openalex.org/C2777904410 |
| concepts[1].level | 2 |
| concepts[1].score | 0.5205487012863159 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q7397 |
| concepts[1].display_name | Software |
| concepts[2].id | https://openalex.org/C37789001 |
| concepts[2].level | 2 |
| concepts[2].score | 0.49636322259902954 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q782543 |
| concepts[2].display_name | Graphical user interface |
| concepts[3].id | https://openalex.org/C113843644 |
| concepts[3].level | 4 |
| concepts[3].score | 0.4826555848121643 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q901882 |
| concepts[3].display_name | Interface (matter) |
| concepts[4].id | https://openalex.org/C2776878037 |
| concepts[4].level | 3 |
| concepts[4].score | 0.4814847707748413 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q169444 |
| concepts[4].display_name | Zebrafish |
| concepts[5].id | https://openalex.org/C2776401178 |
| concepts[5].level | 2 |
| concepts[5].score | 0.4596194624900818 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q12050496 |
| concepts[5].display_name | Feature (linguistics) |
| concepts[6].id | https://openalex.org/C138673069 |
| concepts[6].level | 2 |
| concepts[6].score | 0.44370776414871216 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q322229 |
| concepts[6].display_name | Tracing |
| concepts[7].id | https://openalex.org/C2776214188 |
| concepts[7].level | 2 |
| concepts[7].score | 0.4326880872249603 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q408386 |
| concepts[7].display_name | Inference |
| concepts[8].id | https://openalex.org/C154945302 |
| concepts[8].level | 1 |
| concepts[8].score | 0.4197234511375427 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[8].display_name | Artificial intelligence |
| concepts[9].id | https://openalex.org/C89505385 |
| concepts[9].level | 2 |
| concepts[9].score | 0.41827940940856934 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q47146 |
| concepts[9].display_name | User interface |
| concepts[10].id | https://openalex.org/C50644808 |
| concepts[10].level | 2 |
| concepts[10].score | 0.41730397939682007 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q192776 |
| concepts[10].display_name | Artificial neural network |
| concepts[11].id | https://openalex.org/C107457646 |
| concepts[11].level | 1 |
| concepts[11].score | 0.3533545732498169 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q207434 |
| concepts[11].display_name | Human–computer interaction |
| concepts[12].id | https://openalex.org/C70721500 |
| concepts[12].level | 1 |
| concepts[12].score | 0.3523743748664856 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q177005 |
| concepts[12].display_name | Computational biology |
| concepts[13].id | https://openalex.org/C119857082 |
| concepts[13].level | 1 |
| concepts[13].score | 0.34662145376205444 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q2539 |
| concepts[13].display_name | Machine learning |
| concepts[14].id | https://openalex.org/C86803240 |
| concepts[14].level | 0 |
| concepts[14].score | 0.2892756164073944 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[14].display_name | Biology |
| concepts[15].id | https://openalex.org/C111919701 |
| concepts[15].level | 1 |
| concepts[15].score | 0.25276070833206177 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q9135 |
| concepts[15].display_name | Operating system |
| concepts[16].id | https://openalex.org/C104317684 |
| concepts[16].level | 2 |
| concepts[16].score | 0.14364954829216003 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[16].display_name | Gene |
| concepts[17].id | https://openalex.org/C54355233 |
| concepts[17].level | 1 |
| concepts[17].score | 0.12389788031578064 |
| concepts[17].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[17].display_name | Genetics |
| concepts[18].id | https://openalex.org/C129307140 |
| concepts[18].level | 3 |
| concepts[18].score | 0.0 |
| concepts[18].wikidata | https://www.wikidata.org/wiki/Q6795880 |
| concepts[18].display_name | Maximum bubble pressure method |
| concepts[19].id | https://openalex.org/C41895202 |
| concepts[19].level | 1 |
| concepts[19].score | 0.0 |
| concepts[19].wikidata | https://www.wikidata.org/wiki/Q8162 |
| concepts[19].display_name | Linguistics |
| concepts[20].id | https://openalex.org/C138885662 |
| concepts[20].level | 0 |
| concepts[20].score | 0.0 |
| concepts[20].wikidata | https://www.wikidata.org/wiki/Q5891 |
| concepts[20].display_name | Philosophy |
| concepts[21].id | https://openalex.org/C157915830 |
| concepts[21].level | 2 |
| concepts[21].score | 0.0 |
| concepts[21].wikidata | https://www.wikidata.org/wiki/Q2928001 |
| concepts[21].display_name | Bubble |
| keywords[0].id | https://openalex.org/keywords/computer-science |
| keywords[0].score | 0.6799014210700989 |
| keywords[0].display_name | Computer science |
| keywords[1].id | https://openalex.org/keywords/software |
| keywords[1].score | 0.5205487012863159 |
| keywords[1].display_name | Software |
| keywords[2].id | https://openalex.org/keywords/graphical-user-interface |
| keywords[2].score | 0.49636322259902954 |
| keywords[2].display_name | Graphical user interface |
| keywords[3].id | https://openalex.org/keywords/interface |
| keywords[3].score | 0.4826555848121643 |
| keywords[3].display_name | Interface (matter) |
| keywords[4].id | https://openalex.org/keywords/zebrafish |
| keywords[4].score | 0.4814847707748413 |
| keywords[4].display_name | Zebrafish |
| keywords[5].id | https://openalex.org/keywords/feature |
| keywords[5].score | 0.4596194624900818 |
| keywords[5].display_name | Feature (linguistics) |
| keywords[6].id | https://openalex.org/keywords/tracing |
| keywords[6].score | 0.44370776414871216 |
| keywords[6].display_name | Tracing |
| keywords[7].id | https://openalex.org/keywords/inference |
| keywords[7].score | 0.4326880872249603 |
| keywords[7].display_name | Inference |
| keywords[8].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[8].score | 0.4197234511375427 |
| keywords[8].display_name | Artificial intelligence |
| keywords[9].id | https://openalex.org/keywords/user-interface |
| keywords[9].score | 0.41827940940856934 |
| keywords[9].display_name | User interface |
| keywords[10].id | https://openalex.org/keywords/artificial-neural-network |
| keywords[10].score | 0.41730397939682007 |
| keywords[10].display_name | Artificial neural network |
| keywords[11].id | https://openalex.org/keywords/human–computer-interaction |
| keywords[11].score | 0.3533545732498169 |
| keywords[11].display_name | Human–computer interaction |
| keywords[12].id | https://openalex.org/keywords/computational-biology |
| keywords[12].score | 0.3523743748664856 |
| keywords[12].display_name | Computational biology |
| keywords[13].id | https://openalex.org/keywords/machine-learning |
| keywords[13].score | 0.34662145376205444 |
| keywords[13].display_name | Machine learning |
| keywords[14].id | https://openalex.org/keywords/biology |
| keywords[14].score | 0.2892756164073944 |
| keywords[14].display_name | Biology |
| keywords[15].id | https://openalex.org/keywords/operating-system |
| keywords[15].score | 0.25276070833206177 |
| keywords[15].display_name | Operating system |
| keywords[16].id | https://openalex.org/keywords/gene |
| keywords[16].score | 0.14364954829216003 |
| keywords[16].display_name | Gene |
| keywords[17].id | https://openalex.org/keywords/genetics |
| keywords[17].score | 0.12389788031578064 |
| keywords[17].display_name | Genetics |
| language | en |
| locations[0].id | doi:10.1186/s12859-025-06042-2 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S19032547 |
| locations[0].source.issn | 1471-2105 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | True |
| locations[0].source.issn_l | 1471-2105 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | BMC Bioinformatics |
| locations[0].source.host_organization | https://openalex.org/P4310320256 |
| locations[0].source.host_organization_name | BioMed Central |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| locations[0].source.host_organization_lineage_names | BioMed Central, Springer Nature |
| locations[0].license | cc-by |
| locations[0].pdf_url | |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | BMC Bioinformatics |
| locations[0].landing_page_url | https://doi.org/10.1186/s12859-025-06042-2 |
| locations[1].id | pmid:39875867 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | BMC bioinformatics |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/39875867 |
| locations[2].id | pmh:oai:pubmedcentral.nih.gov:11773884 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S2764455111 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | PubMed Central |
| locations[2].source.host_organization | https://openalex.org/I1299303238 |
| locations[2].source.host_organization_name | National Institutes of Health |
| locations[2].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[2].license | other-oa |
| locations[2].pdf_url | |
| locations[2].version | submittedVersion |
| locations[2].raw_type | Text |
| locations[2].license_id | https://openalex.org/licenses/other-oa |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | BMC Bioinformatics |
| locations[2].landing_page_url | https://www.ncbi.nlm.nih.gov/pmc/articles/11773884 |
| locations[3].id | pmh:oai:doaj.org/article:e0bc4557c0a347fba260d67e4dcde872 |
| locations[3].is_oa | False |
| locations[3].source.id | https://openalex.org/S4306401280 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | DOAJ (DOAJ: Directory of Open Access Journals) |
| locations[3].source.host_organization | |
| locations[3].source.host_organization_name | |
| locations[3].license | |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | article |
| locations[3].license_id | |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | BMC Bioinformatics, Vol 26, Iss 1, Pp 1-30 (2025) |
| locations[3].landing_page_url | https://doaj.org/article/e0bc4557c0a347fba260d67e4dcde872 |
| indexed_in | crossref, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5084567237 |
| authorships[0].author.orcid | https://orcid.org/0000-0001-9220-3654 |
| authorships[0].author.display_name | Gregory Teicher |
| authorships[0].countries | US |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[0].affiliations[0].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[0].institutions[0].id | https://openalex.org/I177605424 |
| authorships[0].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[0].institutions[0].country_code | US |
| authorships[0].institutions[0].display_name | Amherst College |
| authorships[0].institutions[1].id | https://openalex.org/I24603500 |
| authorships[0].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[0].institutions[1].type | education |
| authorships[0].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[0].institutions[1].country_code | US |
| authorships[0].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Gregory Teicher |
| authorships[0].is_corresponding | True |
| authorships[0].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[1].author.id | https://openalex.org/A5021548455 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-1080-4120 |
| authorships[1].author.display_name | R. Madison Riffe |
| authorships[1].countries | US |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[1].affiliations[0].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[1].institutions[0].id | https://openalex.org/I177605424 |
| authorships[1].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[1].institutions[0].country_code | US |
| authorships[1].institutions[0].display_name | Amherst College |
| authorships[1].institutions[1].id | https://openalex.org/I24603500 |
| authorships[1].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[1].institutions[1].type | education |
| authorships[1].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[1].institutions[1].country_code | US |
| authorships[1].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | R. Madison Riffe |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[2].author.id | https://openalex.org/A5054134478 |
| authorships[2].author.orcid | https://orcid.org/0000-0003-1321-5134 |
| authorships[2].author.display_name | Wayne Barnaby |
| authorships[2].countries | US |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I24603500 |
| authorships[2].affiliations[0].raw_affiliation_string | Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[2].affiliations[1].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[2].affiliations[1].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[2].institutions[0].id | https://openalex.org/I177605424 |
| authorships[2].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[2].institutions[0].country_code | US |
| authorships[2].institutions[0].display_name | Amherst College |
| authorships[2].institutions[1].id | https://openalex.org/I24603500 |
| authorships[2].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[2].institutions[1].type | education |
| authorships[2].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[2].institutions[1].country_code | US |
| authorships[2].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Wayne Barnaby |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA, Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[3].author.id | https://openalex.org/A5110453954 |
| authorships[3].author.orcid | |
| authorships[3].author.display_name | Gabrielle Martin |
| authorships[3].countries | US |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[3].affiliations[0].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[3].institutions[0].id | https://openalex.org/I177605424 |
| authorships[3].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[3].institutions[0].country_code | US |
| authorships[3].institutions[0].display_name | Amherst College |
| authorships[3].institutions[1].id | https://openalex.org/I24603500 |
| authorships[3].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[3].institutions[1].type | education |
| authorships[3].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[3].institutions[1].country_code | US |
| authorships[3].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Gabrielle Martin |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[4].author.id | https://openalex.org/A5031462584 |
| authorships[4].author.orcid | https://orcid.org/0000-0002-5595-785X |
| authorships[4].author.display_name | B. E. Clayton |
| authorships[4].countries | US |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[4].affiliations[0].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[4].institutions[0].id | https://openalex.org/I177605424 |
| authorships[4].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[4].institutions[0].country_code | US |
| authorships[4].institutions[0].display_name | Amherst College |
| authorships[4].institutions[1].id | https://openalex.org/I24603500 |
| authorships[4].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[4].institutions[1].type | education |
| authorships[4].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[4].institutions[1].country_code | US |
| authorships[4].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Benjamin E. Clayton |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[5].author.id | https://openalex.org/A5078528240 |
| authorships[5].author.orcid | https://orcid.org/0000-0002-6898-649X |
| authorships[5].author.display_name | Josef G. Trapani |
| authorships[5].countries | US |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I24603500 |
| authorships[5].affiliations[0].raw_affiliation_string | Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[5].institutions[0].id | https://openalex.org/I24603500 |
| authorships[5].institutions[0].ror | https://ror.org/0072zz521 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I24603500 |
| authorships[5].institutions[0].country_code | US |
| authorships[5].institutions[0].display_name | University of Massachusetts Amherst |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Josef G. Trapani |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[6].author.id | https://openalex.org/A5040225358 |
| authorships[6].author.orcid | https://orcid.org/0000-0003-4704-2921 |
| authorships[6].author.display_name | Gerald B. Downes |
| authorships[6].countries | US |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I24603500 |
| authorships[6].affiliations[0].raw_affiliation_string | Molecular and Cellular Biology Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[6].affiliations[1].institution_ids | https://openalex.org/I24603500 |
| authorships[6].affiliations[1].raw_affiliation_string | Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[6].affiliations[2].institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| authorships[6].affiliations[2].raw_affiliation_string | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA |
| authorships[6].institutions[0].id | https://openalex.org/I177605424 |
| authorships[6].institutions[0].ror | https://ror.org/028vqfs63 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I177605424 |
| authorships[6].institutions[0].country_code | US |
| authorships[6].institutions[0].display_name | Amherst College |
| authorships[6].institutions[1].id | https://openalex.org/I24603500 |
| authorships[6].institutions[1].ror | https://ror.org/0072zz521 |
| authorships[6].institutions[1].type | education |
| authorships[6].institutions[1].lineage | https://openalex.org/I24603500 |
| authorships[6].institutions[1].country_code | US |
| authorships[6].institutions[1].display_name | University of Massachusetts Amherst |
| authorships[6].author_position | last |
| authorships[6].raw_author_name | Gerald B. Downes |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Biology Department, University of Massachusetts Amherst, Amherst, MA, USA, Molecular and Cellular Biology Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA, Neuroscience and Behavior Graduate Program, University of Massachusetts Amherst, Amherst, MA, USA |
| has_content.pdf | False |
| has_content.grobid_xml | False |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://doi.org/10.1186/s12859-025-06042-2 |
| open_access.oa_status | gold |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Marigold: a machine learning-based web app for zebrafish pose tracking |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-23T05:10:03.516525 |
| primary_topic.id | https://openalex.org/T11685 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9998999834060669 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1307 |
| primary_topic.subfield.display_name | Cell Biology |
| primary_topic.display_name | Zebrafish Biomedical Research Applications |
| related_works | https://openalex.org/W3180179400, https://openalex.org/W2118366689, https://openalex.org/W2477652530, https://openalex.org/W2116888309, https://openalex.org/W2039055059, https://openalex.org/W2381088774, https://openalex.org/W2281900275, https://openalex.org/W1936193182, https://openalex.org/W2183494409, https://openalex.org/W963721989 |
| cited_by_count | 0 |
| locations_count | 4 |
| best_oa_location.id | doi:10.1186/s12859-025-06042-2 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S19032547 |
| best_oa_location.source.issn | 1471-2105 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | True |
| best_oa_location.source.issn_l | 1471-2105 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | BMC Bioinformatics |
| best_oa_location.source.host_organization | https://openalex.org/P4310320256 |
| best_oa_location.source.host_organization_name | BioMed Central |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| best_oa_location.source.host_organization_lineage_names | BioMed Central, Springer Nature |
| best_oa_location.license | cc-by |
| best_oa_location.pdf_url | |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | BMC Bioinformatics |
| best_oa_location.landing_page_url | https://doi.org/10.1186/s12859-025-06042-2 |
| primary_location.id | doi:10.1186/s12859-025-06042-2 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S19032547 |
| primary_location.source.issn | 1471-2105 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | True |
| primary_location.source.issn_l | 1471-2105 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | BMC Bioinformatics |
| primary_location.source.host_organization | https://openalex.org/P4310320256 |
| primary_location.source.host_organization_name | BioMed Central |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310320256, https://openalex.org/P4310319965 |
| primary_location.source.host_organization_lineage_names | BioMed Central, Springer Nature |
| primary_location.license | cc-by |
| primary_location.pdf_url | |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | BMC Bioinformatics |
| primary_location.landing_page_url | https://doi.org/10.1186/s12859-025-06042-2 |
| publication_date | 2025-01-28 |
| publication_year | 2025 |
| referenced_works | https://openalex.org/W4394998532, https://openalex.org/W2899519448, https://openalex.org/W3046352069, https://openalex.org/W4394666973, https://openalex.org/W1984701456, https://openalex.org/W2892012523, https://openalex.org/W3202613539, https://openalex.org/W2936128237, https://openalex.org/W3128633047, https://openalex.org/W2168441478, https://openalex.org/W2023906702, https://openalex.org/W2141066952, https://openalex.org/W4313608333, https://openalex.org/W1958877729, https://openalex.org/W2904263060, https://openalex.org/W4402137675, https://openalex.org/W1979933042, https://openalex.org/W3094502228, https://openalex.org/W2084699385, https://openalex.org/W2803271184, https://openalex.org/W4308721060, https://openalex.org/W4303441858, https://openalex.org/W2166165431, https://openalex.org/W4398209670, https://openalex.org/W4321616064, https://openalex.org/W1947859348, https://openalex.org/W2941352015, https://openalex.org/W3200707343, https://openalex.org/W3134942451, https://openalex.org/W2625141509, https://openalex.org/W3035965352, https://openalex.org/W2886409498, https://openalex.org/W2469053820, https://openalex.org/W4394645124, https://openalex.org/W4297775537, https://openalex.org/W1981239255, https://openalex.org/W1836465849, https://openalex.org/W3014974815, https://openalex.org/W3121485654, https://openalex.org/W1999603779, https://openalex.org/W2908501762, https://openalex.org/W2165671016, https://openalex.org/W1944509114, https://openalex.org/W4297575730, https://openalex.org/W2908510526, https://openalex.org/W3128602840, https://openalex.org/W4297038078, https://openalex.org/W2613858455, https://openalex.org/W4282971804, https://openalex.org/W2781525085, https://openalex.org/W2887114371, https://openalex.org/W2254516265, https://openalex.org/W2054224074, https://openalex.org/W2342249984, https://openalex.org/W2054795352, https://openalex.org/W4387211347, https://openalex.org/W2950762923, https://openalex.org/W2952956973, https://openalex.org/W4392643160, https://openalex.org/W2582743722, https://openalex.org/W2951646122, https://openalex.org/W4387873291, https://openalex.org/W2908783938, https://openalex.org/W4300424419, https://openalex.org/W2889320194, https://openalex.org/W4383621190, https://openalex.org/W3043116661, https://openalex.org/W2796438033, https://openalex.org/W3157322069, https://openalex.org/W4302023899, https://openalex.org/W2954996726, https://openalex.org/W4313414839, https://openalex.org/W2908701480, https://openalex.org/W2999156148, https://openalex.org/W4237829275, https://openalex.org/W2904059336, https://openalex.org/W4288335579, https://openalex.org/W3049611888, https://openalex.org/W3043319222, https://openalex.org/W4365600532, https://openalex.org/W3157506437, https://openalex.org/W4285661751, https://openalex.org/W2502312327, https://openalex.org/W4385245566, https://openalex.org/W4318348977, https://openalex.org/W3003257820, https://openalex.org/W4242289937, https://openalex.org/W4313484649, https://openalex.org/W4322615161, https://openalex.org/W2796779902, https://openalex.org/W4319165877, https://openalex.org/W3216764662, https://openalex.org/W4288621368, https://openalex.org/W4289345622, https://openalex.org/W4379054622, https://openalex.org/W3099878876, https://openalex.org/W3210517508, https://openalex.org/W3112701542 |
| referenced_works_count | 98 |
| abstract_inverted_index | |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5084567237 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 7 |
| corresponding_institution_ids | https://openalex.org/I177605424, https://openalex.org/I24603500 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[0].score | 0.5400000214576721 |
| sustainable_development_goals[0].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.0272761 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |