Measuring the average cell size and width of its distribution in cellular tissues using Fourier Transform Article Swipe
Tess Homan
,
Sylvain Monnier
,
Cécile Jebane
,
Alice Nicolas
,
Hélène Delanoë‐Ayari
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.48550/arxiv.2008.12036
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.48550/arxiv.2008.12036
We present an in-depth investigation of a fully automated Fourier-based analysis to determine the cell size and the width of its distribution in 3D biological tissues. The results are thoroughly tested using generated images, and we offer valuable criteria for image acquisition settings to optimize accuracy. We demonstrate that the most important parameter is the number of cells in the field of view, and we show that accurate measurements can already be made on volume only containing 3x3x3 cells. The resolution in $z$ is also not so important and a reduced number of in-depth images, of order of one per cell, already provides a measure of the mean cell size with less than 5\% error. The technique thus appears to be a very promising tool for very fast live local volume cell measurement in 3D tissues \textit{in vivo} while strongly limiting photobleaching and phototoxicity issues.
Related Topics
Concepts
Fourier transform
Photobleaching
Volume (thermodynamics)
Cell size
Measure (data warehouse)
Resolution (logic)
Biological system
Fourier analysis
Distribution (mathematics)
Optics
Computer science
Algorithm
Physics
Materials science
Mathematics
Artificial intelligence
Biology
Mathematical analysis
Cell biology
Data mining
Fluorescence
Quantum mechanics
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.48550/arxiv.2008.12036
- OA Status
- green
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- 10
- OpenAlex ID
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https://doi.org/10.48550/arxiv.2008.12036Digital Object Identifier
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Measuring the average cell size and width of its distribution in cellular tissues using Fourier TransformWork title
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preprintOpenAlex work type
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enPrimary language
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2020Year of publication
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2020-08-27Full publication date if available
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Tess Homan, Sylvain Monnier, Cécile Jebane, Alice Nicolas, Hélène Delanoë‐AyariList of authors in order
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https://doi.org/10.48550/arxiv.2008.12036Publisher landing page
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://doi.org/10.48550/arxiv.2008.12036Direct OA link when available
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| abstract_inverted_index.appears | 118 |
| abstract_inverted_index.images, | 33, 94 |
| abstract_inverted_index.issues. | 144 |
| abstract_inverted_index.measure | 104 |
| abstract_inverted_index.present | 1 |
| abstract_inverted_index.reduced | 90 |
| abstract_inverted_index.results | 27 |
| abstract_inverted_index.tissues | 135 |
| abstract_inverted_index.accurate | 67 |
| abstract_inverted_index.analysis | 10 |
| abstract_inverted_index.criteria | 38 |
| abstract_inverted_index.in-depth | 3, 93 |
| abstract_inverted_index.limiting | 140 |
| abstract_inverted_index.optimize | 44 |
| abstract_inverted_index.provides | 102 |
| abstract_inverted_index.settings | 42 |
| abstract_inverted_index.strongly | 139 |
| abstract_inverted_index.tissues. | 25 |
| abstract_inverted_index.valuable | 37 |
| abstract_inverted_index.accuracy. | 45 |
| abstract_inverted_index.automated | 8 |
| abstract_inverted_index.determine | 12 |
| abstract_inverted_index.generated | 32 |
| abstract_inverted_index.important | 51, 87 |
| abstract_inverted_index.parameter | 52 |
| abstract_inverted_index.promising | 123 |
| abstract_inverted_index.technique | 116 |
| abstract_inverted_index.\textit{in | 136 |
| abstract_inverted_index.biological | 24 |
| abstract_inverted_index.containing | 76 |
| abstract_inverted_index.resolution | 80 |
| abstract_inverted_index.thoroughly | 29 |
| abstract_inverted_index.acquisition | 41 |
| abstract_inverted_index.demonstrate | 47 |
| abstract_inverted_index.measurement | 132 |
| abstract_inverted_index.distribution | 21 |
| abstract_inverted_index.measurements | 68 |
| abstract_inverted_index.Fourier-based | 9 |
| abstract_inverted_index.investigation | 4 |
| abstract_inverted_index.phototoxicity | 143 |
| abstract_inverted_index.photobleaching | 141 |
| cited_by_percentile_year | |
| countries_distinct_count | 0 |
| institutions_distinct_count | 5 |
| citation_normalized_percentile |