Metagenomic detection of central nervous system infections missedby conventional testing Article Swipe
YOU?
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· 2025
· Open Access
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· DOI: https://doi.org/10.1172/jci.insight.189295
Community-acquired infectious meningoencephalitis is associated with high rates of mortality and morbidity, compounded by limited access to diagnostic resources. The current study assessed acute central nervous system (CNS) infections in patients with meningoencephalitis enrolled in a hospital-based diagnostic surveillance study in São Paulo, Brazil. Cerebrospinal fluid (CSF) was collected from 600 patients between March 2018 and November 2019 and initially screened for a broad range of pathogens according to a local diagnostic algorithm. Standard microbiological and molecular diagnostic methods were applied. Metagenomic sequencing was used as a complementary approach to investigating etiology in instances where no pathogen was initially identified. Standard testing identified infectious etiologies in 292 patients (48.6%), with 227 (77.7%) confirmed as viral infections, predominantly caused by enteroviruses (n = 144) and herpesviruses (n = 40). Nonviral agents were identified in 65 patients (22.3%). Metagenomic sequencing (mNGS) of 277 of 308 undiagnosed patients revealed several additional potential etiologies, including Parvovirus B19, Toxoplasma gondii, Picobirnavirus, other enterovirus species and Vesivirus, the latter being associated with CNS infection for the first time. These findings underscore the complexity of CNS infections and highlight the potential of metagenomics to improve diagnostic accuracy, inform treatment strategies, and support efforts to address future pandemics.
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1172/jci.insight.189295
- http://insight.jci.org/articles/view/189295/files/pdf
- OA Status
- gold
- Cited By
- 1
- References
- 53
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4410531533
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4410531533Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1172/jci.insight.189295Digital Object Identifier
- Title
-
Metagenomic detection of central nervous system infections missedby conventional testingWork title
- Type
-
articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
-
2025-05-20Full publication date if available
- Authors
-
Noely Evangelista Ferreira, Michael G. Berg, Antônio Charlys da Costa, Mary A. Rodgers, Esper G. Kallás, Catarina Silveira, Mateus Vailant Thomazella, Ana Carolina Soares de Oliveira, Layla Honorato, Heuder Gustavo Oliveira Paião, Renán Barros Domingues, Carlos Senne, Marina Farrel Côrtes, Tânia Regina Tozetto‐Mendoza, Hélio Rodrigues Gomes, María Laura Matos, Gislaine Ribeiro Pereira, Steven S. Witkin, Gavin Cloherty, Maria Cássia Mendes-CorrêaList of authors in order
- Landing page
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https://doi.org/10.1172/jci.insight.189295Publisher landing page
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https://insight.jci.org/articles/view/189295/files/pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://insight.jci.org/articles/view/189295/files/pdfDirect OA link when available
- Concepts
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Metagenomics, Central nervous system, Computational biology, Computer science, Medicine, Biology, Neuroscience, Biochemistry, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
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1Total citation count in OpenAlex
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-
2025: 1Per-year citation counts (last 5 years)
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53Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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