Mitochondrial mRNA and the small subunit rRNA in budding yeasts undergo 3′-end processing at conserved species-specific elements Article Swipe
Michael Anikin
,
Michael F. Henry
,
Viktória Hodorová
,
Hristo B Houbaviy
,
Jozef Nosek
,
Dimitri G. Pestov
,
Dmitriy Markov
·
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1261/rna.080254.124
YOU?
·
· 2024
· Open Access
·
· DOI: https://doi.org/10.1261/rna.080254.124
Respiration in eukaryotes depends on mitochondrial protein synthesis, which is performed by organelle-specific ribosomes translating organelle-encoded mRNAs. Although RNA maturation and stability are central events controlling mitochondrial gene expression, many of the molecular details in this pathway remain elusive. These include cis- and trans -regulatory factors that generate and protect the 3′ ends. Here, we mapped the 3′ ends of mitochondrial mRNAs of yeasts classified into multiple families of the subphylum Saccharomycotina. We found that the processing of mitochondrial 15S rRNA and mRNAs involves species-specific sequence elements, which we term 3′-end RNA processing elements (3′-RPEs). In Saccharomyces cerevisiae, the 3′-RPE has long been recognized as a conserved dodecamer sequence, which recent studies have shown specifically interacts with the nuclear genome-encoded pentatricopeptide repeat protein Rmd9. We also demonstrate that, analogous to Rmd9 in S. cerevisiae , two Rmd9 orthologs from the Debaryomycetaceae family interact with their respective 3′-RPEs found in mRNAs and 15S rRNA. Thus, Rmd9-dependent processing of mitochondrial RNA precursors may be a common mechanism among the families of the Saccharomycotina subphylum. Surprisingly, we observed that 3′-RPEs often occur upstream of stop codons in complex I subunit mRNAs from yeasts of the CUG-Ser1 clade. We examined two of these mature mRNAs and found that their stop codons are indeed removed. Thus, translation of these stop-codon-less transcripts would require a noncanonical termination mechanism. Our findings highlight Rmd9 as a key evolutionarily conserved factor in both mitochondrial mRNA metabolism and mitoribosome biogenesis in a variety of yeasts.
Related Topics
Concepts
Biology
Mitochondrial ribosome
Ribosomal RNA
Genetics
Ribosome
Saccharomyces cerevisiae
Mitochondrial DNA
RNA
Cell biology
Gene
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1261/rna.080254.124
- http://rnajournal.cshlp.org/content/early/2024/11/21/rna.080254.124.full.pdf
- OA Status
- hybrid
- Cited By
- 1
- References
- 77
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4404587175
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4404587175Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1261/rna.080254.124Digital Object Identifier
- Title
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Mitochondrial mRNA and the small subunit rRNA in budding yeasts undergo 3′-end processing at conserved species-specific elementsWork title
- Type
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articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2024Year of publication
- Publication date
-
2024-11-21Full publication date if available
- Authors
-
Michael Anikin, Michael F. Henry, Viktória Hodorová, Hristo B Houbaviy, Jozef Nosek, Dimitri G. Pestov, Dmitriy MarkovList of authors in order
- Landing page
-
https://doi.org/10.1261/rna.080254.124Publisher landing page
- PDF URL
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https://rnajournal.cshlp.org/content/early/2024/11/21/rna.080254.124.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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hybridOpen access status per OpenAlex
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https://rnajournal.cshlp.org/content/early/2024/11/21/rna.080254.124.full.pdfDirect OA link when available
- Concepts
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Biology, Mitochondrial ribosome, Ribosomal RNA, Genetics, Ribosome, Saccharomyces cerevisiae, Mitochondrial DNA, RNA, Cell biology, GeneTop concepts (fields/topics) attached by OpenAlex
- Cited by
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1Total citation count in OpenAlex
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2025: 1Per-year citation counts (last 5 years)
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77Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.molecular | 32 |
| abstract_inverted_index.orthologs | 137 |
| abstract_inverted_index.performed | 10 |
| abstract_inverted_index.ribosomes | 13 |
| abstract_inverted_index.sequence, | 108 |
| abstract_inverted_index.stability | 21 |
| abstract_inverted_index.subphylum | 70 |
| abstract_inverted_index.biogenesis | 239 |
| abstract_inverted_index.cerevisiae | 133 |
| abstract_inverted_index.classified | 64 |
| abstract_inverted_index.eukaryotes | 2 |
| abstract_inverted_index.maturation | 19 |
| abstract_inverted_index.mechanism. | 221 |
| abstract_inverted_index.metabolism | 236 |
| abstract_inverted_index.precursors | 159 |
| abstract_inverted_index.processing | 76, 92, 155 |
| abstract_inverted_index.recognized | 103 |
| abstract_inverted_index.respective | 145 |
| abstract_inverted_index.subphylum. | 171 |
| abstract_inverted_index.synthesis, | 7 |
| abstract_inverted_index.-regulatory | 44 |
| abstract_inverted_index.Respiration | 0 |
| abstract_inverted_index.cerevisiae, | 97 |
| abstract_inverted_index.controlling | 25 |
| abstract_inverted_index.demonstrate | 126 |
| abstract_inverted_index.expression, | 28 |
| abstract_inverted_index.termination | 220 |
| abstract_inverted_index.transcripts | 215 |
| abstract_inverted_index.translating | 14 |
| abstract_inverted_index.translation | 211 |
| abstract_inverted_index.(3′-RPEs). | 94 |
| abstract_inverted_index.mitoribosome | 238 |
| abstract_inverted_index.noncanonical | 219 |
| abstract_inverted_index.specifically | 114 |
| abstract_inverted_index.Saccharomyces | 96 |
| abstract_inverted_index.Surprisingly, | 172 |
| abstract_inverted_index.mitochondrial | 5, 26, 60, 78, 157, 234 |
| abstract_inverted_index.Rmd9-dependent | 154 |
| abstract_inverted_index.evolutionarily | 229 |
| abstract_inverted_index.genome-encoded | 119 |
| abstract_inverted_index.stop-codon-less | 214 |
| abstract_inverted_index.Saccharomycotina | 170 |
| abstract_inverted_index.species-specific | 84 |
| abstract_inverted_index.Debaryomycetaceae | 140 |
| abstract_inverted_index.Saccharomycotina. | 71 |
| abstract_inverted_index.organelle-encoded | 15 |
| abstract_inverted_index.pentatricopeptide | 120 |
| abstract_inverted_index.organelle-specific | 12 |
| cited_by_percentile_year.max | 95 |
| cited_by_percentile_year.min | 91 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 7 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.6200000047683716 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.63645891 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |