MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years Article Swipe
Tao Zhu
,
Yukuto Sato
,
Tetsuya Sado
,
Masaki Miya
,
Wataru Iwasaki
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msad035
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.1093/molbev/msad035
MitoFish, MitoAnnotator, and MiFish Pipeline are comprehensive databases of fish mitochondrial genomes (mitogenomes), accurate annotation software of fish mitogenomes, and a web platform for metabarcoding analysis of fish mitochondrial environmental DNA (eDNA), respectively. The MitoFish Suite currently receives over 48,000 visits worldwide every year; however, the performance and usefulness of the online platforms can still be improved. Here, we present essential updates on these platforms, including an enrichment of the reference data sets, an enhanced searching function, substantially faster genome annotation and eDNA analysis with the denoising of sequencing errors, and a multisample comparative analysis function. These updates have made our platform more intuitive, effective, and reliable. These updated platforms are freely available at http://mitofish.aori.u-tokyo.ac.jp/.
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/molbev/msad035
- https://academic.oup.com/mbe/article-pdf/40/3/msad035/49429182/msad035.pdf
- OA Status
- gold
- Cited By
- 113
- References
- 16
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4322718637
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4322718637Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/molbev/msad035Digital Object Identifier
- Title
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MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 YearsWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
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2023-02-28Full publication date if available
- Authors
-
Tao Zhu, Yukuto Sato, Tetsuya Sado, Masaki Miya, Wataru IwasakiList of authors in order
- Landing page
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https://doi.org/10.1093/molbev/msad035Publisher landing page
- PDF URL
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https://academic.oup.com/mbe/article-pdf/40/3/msad035/49429182/msad035.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://academic.oup.com/mbe/article-pdf/40/3/msad035/49429182/msad035.pdfDirect OA link when available
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Biology, Annotation, Pipeline (software), Genome, Software, Suite, Function (biology), Fish
, Computational biology, Evolutionary biology, Computer science, Bioinformatics, Genetics, Fishery, Gene, Archaeology, History, Programming language Top concepts (fields/topics) attached by OpenAlex - Cited by
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113Total citation count in OpenAlex
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2025: 56, 2024: 44, 2023: 13Per-year citation counts (last 5 years)
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16Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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