MODE-TASK: large-scale protein motion tools Article Swipe
Caroline Jane Ross
,
Bilal Nizami
,
Michael Glenister
,
Olivier Sheik Amamuddy
,
Ali Rana Atılgan
,
Canan Atılgan
,
Özlem Taştan Bishop
·
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/bty427
YOU?
·
· 2018
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/bty427
Summary MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin. Availability and implementation MODE-TASK is open source, and available for download from https://github.com/RUBi-ZA/MODE-TASK. It is implemented in Python and C++. It is compatible with Python 2.x and Python 3.x and can be installed by Conda. Supplementary information Supplementary data are available at Bioinformatics online.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/bioinformatics/bty427
- OA Status
- green
- Cited By
- 52
- References
- 21
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2767393472
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W2767393472Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1093/bioinformatics/bty427Digital Object Identifier
- Title
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MODE-TASK: large-scale protein motion toolsWork title
- Type
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2018Year of publication
- Publication date
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2018-05-22Full publication date if available
- Authors
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Caroline Jane Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atılgan, Canan Atılgan, Özlem Taştan BishopList of authors in order
- Landing page
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https://doi.org/10.1093/bioinformatics/bty427Publisher landing page
- Open access
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
- OA URL
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https://www.ncbi.nlm.nih.gov/pmc/articles/6198866Direct OA link when available
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Computer science, Task (project management), Scale (ratio), Mode (computer interface), Motion (physics), Artificial intelligence, Human–computer interaction, Systems engineering, Engineering, Geography, CartographyTop concepts (fields/topics) attached by OpenAlex
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52Total citation count in OpenAlex
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2025: 9, 2024: 9, 2023: 5, 2022: 8, 2021: 13Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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