MODE-TASK: Large-scale protein motion tools Article Swipe
Caroline Jane Ross
,
Bilal Nizami
,
Michael Glenister
,
Olivier Sheik Amamuddy
,
Ali Rana Atılgan
,
Canan Atılgan
,
Özlem Taştan Bishop
·
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1101/217505
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1101/217505
Summary MODE-TASK, a novel software suite, comprises Principle Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using molecular dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Availability and Implementation MODE-TASK has been open-sourced, and is available for download from https://github.com/RUBi-ZA/MODE-TASK , implemented in Python and C++. Supplementary information Documentation available at http://mode-task.readthedocs.io .
Related Topics
Concepts
Python (programming language)
Computer science
Mode (computer interface)
Documentation
Task (project management)
Embedding
Suite
Software suite
Software
Scaling
Human–computer interaction
Artificial intelligence
Operating system
Engineering
Mathematics
Archaeology
Geometry
Systems engineering
History
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/217505
- https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdf
- OA Status
- green
- Cited By
- 1
- References
- 12
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2950754726
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2950754726Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/217505Digital Object Identifier
- Title
-
MODE-TASK: Large-scale protein motion toolsWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2017Year of publication
- Publication date
-
2017-11-10Full publication date if available
- Authors
-
Caroline Jane Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atılgan, Canan Atılgan, Özlem Taştan BishopList of authors in order
- Landing page
-
https://doi.org/10.1101/217505Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdfDirect OA link when available
- Concepts
-
Python (programming language), Computer science, Mode (computer interface), Documentation, Task (project management), Embedding, Suite, Software suite, Software, Scaling, Human–computer interaction, Artificial intelligence, Operating system, Engineering, Mathematics, Archaeology, Geometry, Systems engineering, HistoryTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
1Total citation count in OpenAlex
- Citations by year (recent)
-
2018: 1Per-year citation counts (last 5 years)
- References (count)
-
12Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2950754726 |
|---|---|
| doi | https://doi.org/10.1101/217505 |
| ids.doi | https://doi.org/10.1101/217505 |
| ids.mag | 2950754726 |
| ids.openalex | https://openalex.org/W2950754726 |
| fwci | 0.13361471 |
| type | preprint |
| title | MODE-TASK: Large-scale protein motion tools |
| biblio.issue | |
| biblio.volume | |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T10044 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9998999834060669 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Protein Structure and Dynamics |
| topics[1].id | https://openalex.org/T12254 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9799000024795532 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | Machine Learning in Bioinformatics |
| topics[2].id | https://openalex.org/T10540 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9763000011444092 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1304 |
| topics[2].subfield.display_name | Biophysics |
| topics[2].display_name | Advanced Fluorescence Microscopy Techniques |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| concepts[0].id | https://openalex.org/C519991488 |
| concepts[0].level | 2 |
| concepts[0].score | 0.754040002822876 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q28865 |
| concepts[0].display_name | Python (programming language) |
| concepts[1].id | https://openalex.org/C41008148 |
| concepts[1].level | 0 |
| concepts[1].score | 0.7452510595321655 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[1].display_name | Computer science |
| concepts[2].id | https://openalex.org/C48677424 |
| concepts[2].level | 2 |
| concepts[2].score | 0.6060383319854736 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q6888088 |
| concepts[2].display_name | Mode (computer interface) |
| concepts[3].id | https://openalex.org/C56666940 |
| concepts[3].level | 2 |
| concepts[3].score | 0.5496011972427368 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q788790 |
| concepts[3].display_name | Documentation |
| concepts[4].id | https://openalex.org/C2780451532 |
| concepts[4].level | 2 |
| concepts[4].score | 0.5394848585128784 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q759676 |
| concepts[4].display_name | Task (project management) |
| concepts[5].id | https://openalex.org/C41608201 |
| concepts[5].level | 2 |
| concepts[5].score | 0.5158776044845581 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q980509 |
| concepts[5].display_name | Embedding |
| concepts[6].id | https://openalex.org/C79581498 |
| concepts[6].level | 2 |
| concepts[6].score | 0.4734446704387665 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q1367530 |
| concepts[6].display_name | Suite |
| concepts[7].id | https://openalex.org/C2778736646 |
| concepts[7].level | 3 |
| concepts[7].score | 0.4414021074771881 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q1143070 |
| concepts[7].display_name | Software suite |
| concepts[8].id | https://openalex.org/C2777904410 |
| concepts[8].level | 2 |
| concepts[8].score | 0.4386388957500458 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q7397 |
| concepts[8].display_name | Software |
| concepts[9].id | https://openalex.org/C99844830 |
| concepts[9].level | 2 |
| concepts[9].score | 0.4327232241630554 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q102441924 |
| concepts[9].display_name | Scaling |
| concepts[10].id | https://openalex.org/C107457646 |
| concepts[10].level | 1 |
| concepts[10].score | 0.24186360836029053 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q207434 |
| concepts[10].display_name | Human–computer interaction |
| concepts[11].id | https://openalex.org/C154945302 |
| concepts[11].level | 1 |
| concepts[11].score | 0.2305505871772766 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[11].display_name | Artificial intelligence |
| concepts[12].id | https://openalex.org/C111919701 |
| concepts[12].level | 1 |
| concepts[12].score | 0.15258532762527466 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q9135 |
| concepts[12].display_name | Operating system |
| concepts[13].id | https://openalex.org/C127413603 |
| concepts[13].level | 0 |
| concepts[13].score | 0.10166335105895996 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q11023 |
| concepts[13].display_name | Engineering |
| concepts[14].id | https://openalex.org/C33923547 |
| concepts[14].level | 0 |
| concepts[14].score | 0.07407349348068237 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q395 |
| concepts[14].display_name | Mathematics |
| concepts[15].id | https://openalex.org/C166957645 |
| concepts[15].level | 1 |
| concepts[15].score | 0.0 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q23498 |
| concepts[15].display_name | Archaeology |
| concepts[16].id | https://openalex.org/C2524010 |
| concepts[16].level | 1 |
| concepts[16].score | 0.0 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q8087 |
| concepts[16].display_name | Geometry |
| concepts[17].id | https://openalex.org/C201995342 |
| concepts[17].level | 1 |
| concepts[17].score | 0.0 |
| concepts[17].wikidata | https://www.wikidata.org/wiki/Q682496 |
| concepts[17].display_name | Systems engineering |
| concepts[18].id | https://openalex.org/C95457728 |
| concepts[18].level | 0 |
| concepts[18].score | 0.0 |
| concepts[18].wikidata | https://www.wikidata.org/wiki/Q309 |
| concepts[18].display_name | History |
| keywords[0].id | https://openalex.org/keywords/python |
| keywords[0].score | 0.754040002822876 |
| keywords[0].display_name | Python (programming language) |
| keywords[1].id | https://openalex.org/keywords/computer-science |
| keywords[1].score | 0.7452510595321655 |
| keywords[1].display_name | Computer science |
| keywords[2].id | https://openalex.org/keywords/mode |
| keywords[2].score | 0.6060383319854736 |
| keywords[2].display_name | Mode (computer interface) |
| keywords[3].id | https://openalex.org/keywords/documentation |
| keywords[3].score | 0.5496011972427368 |
| keywords[3].display_name | Documentation |
| keywords[4].id | https://openalex.org/keywords/task |
| keywords[4].score | 0.5394848585128784 |
| keywords[4].display_name | Task (project management) |
| keywords[5].id | https://openalex.org/keywords/embedding |
| keywords[5].score | 0.5158776044845581 |
| keywords[5].display_name | Embedding |
| keywords[6].id | https://openalex.org/keywords/suite |
| keywords[6].score | 0.4734446704387665 |
| keywords[6].display_name | Suite |
| keywords[7].id | https://openalex.org/keywords/software-suite |
| keywords[7].score | 0.4414021074771881 |
| keywords[7].display_name | Software suite |
| keywords[8].id | https://openalex.org/keywords/software |
| keywords[8].score | 0.4386388957500458 |
| keywords[8].display_name | Software |
| keywords[9].id | https://openalex.org/keywords/scaling |
| keywords[9].score | 0.4327232241630554 |
| keywords[9].display_name | Scaling |
| keywords[10].id | https://openalex.org/keywords/human–computer-interaction |
| keywords[10].score | 0.24186360836029053 |
| keywords[10].display_name | Human–computer interaction |
| keywords[11].id | https://openalex.org/keywords/artificial-intelligence |
| keywords[11].score | 0.2305505871772766 |
| keywords[11].display_name | Artificial intelligence |
| keywords[12].id | https://openalex.org/keywords/operating-system |
| keywords[12].score | 0.15258532762527466 |
| keywords[12].display_name | Operating system |
| keywords[13].id | https://openalex.org/keywords/engineering |
| keywords[13].score | 0.10166335105895996 |
| keywords[13].display_name | Engineering |
| keywords[14].id | https://openalex.org/keywords/mathematics |
| keywords[14].score | 0.07407349348068237 |
| keywords[14].display_name | Mathematics |
| language | en |
| locations[0].id | doi:10.1101/217505 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4306402567 |
| locations[0].source.issn | |
| locations[0].source.type | repository |
| locations[0].source.is_oa | False |
| locations[0].source.issn_l | |
| locations[0].source.is_core | False |
| locations[0].source.is_in_doaj | False |
| locations[0].source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| locations[0].source.host_organization | https://openalex.org/I2750212522 |
| locations[0].source.host_organization_name | Cold Spring Harbor Laboratory |
| locations[0].source.host_organization_lineage | https://openalex.org/I2750212522 |
| locations[0].license | cc-by-nc |
| locations[0].pdf_url | https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdf |
| locations[0].version | acceptedVersion |
| locations[0].raw_type | posted-content |
| locations[0].license_id | https://openalex.org/licenses/cc-by-nc |
| locations[0].is_accepted | True |
| locations[0].is_published | False |
| locations[0].raw_source_name | |
| locations[0].landing_page_url | https://doi.org/10.1101/217505 |
| indexed_in | crossref |
| authorships[0].author.id | https://openalex.org/A5036470999 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-4354-6372 |
| authorships[0].author.display_name | Caroline Jane Ross |
| authorships[0].countries | ZA |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I203238179 |
| authorships[0].affiliations[0].raw_affiliation_string | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[0].institutions[0].id | https://openalex.org/I203238179 |
| authorships[0].institutions[0].ror | https://ror.org/016sewp10 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I203238179 |
| authorships[0].institutions[0].country_code | ZA |
| authorships[0].institutions[0].display_name | Rhodes University |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Caroline Ross |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[1].author.id | https://openalex.org/A5050585152 |
| authorships[1].author.orcid | https://orcid.org/0000-0002-4509-2792 |
| authorships[1].author.display_name | Bilal Nizami |
| authorships[1].countries | ZA |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I203238179 |
| authorships[1].affiliations[0].raw_affiliation_string | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[1].institutions[0].id | https://openalex.org/I203238179 |
| authorships[1].institutions[0].ror | https://ror.org/016sewp10 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I203238179 |
| authorships[1].institutions[0].country_code | ZA |
| authorships[1].institutions[0].display_name | Rhodes University |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Bilal Nizami |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[2].author.id | https://openalex.org/A5040513478 |
| authorships[2].author.orcid | https://orcid.org/0000-0001-5363-3547 |
| authorships[2].author.display_name | Michael Glenister |
| authorships[2].countries | ZA |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I203238179 |
| authorships[2].affiliations[0].raw_affiliation_string | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[2].institutions[0].id | https://openalex.org/I203238179 |
| authorships[2].institutions[0].ror | https://ror.org/016sewp10 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I203238179 |
| authorships[2].institutions[0].country_code | ZA |
| authorships[2].institutions[0].display_name | Rhodes University |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Michael Glenister |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[3].author.id | https://openalex.org/A5012149856 |
| authorships[3].author.orcid | https://orcid.org/0000-0002-1781-1382 |
| authorships[3].author.display_name | Olivier Sheik Amamuddy |
| authorships[3].countries | ZA |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I203238179 |
| authorships[3].affiliations[0].raw_affiliation_string | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[3].institutions[0].id | https://openalex.org/I203238179 |
| authorships[3].institutions[0].ror | https://ror.org/016sewp10 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I203238179 |
| authorships[3].institutions[0].country_code | ZA |
| authorships[3].institutions[0].display_name | Rhodes University |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Olivier Sheik Amamuddy |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[4].author.id | https://openalex.org/A5020808875 |
| authorships[4].author.orcid | https://orcid.org/0000-0003-0604-6301 |
| authorships[4].author.display_name | Ali Rana Atılgan |
| authorships[4].countries | TR |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I134235054 |
| authorships[4].affiliations[0].raw_affiliation_string | Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956, Turkey. |
| authorships[4].institutions[0].id | https://openalex.org/I134235054 |
| authorships[4].institutions[0].ror | https://ror.org/049asqa32 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I134235054 |
| authorships[4].institutions[0].country_code | TR |
| authorships[4].institutions[0].display_name | Sabancı Üniversitesi |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Ali Rana Atilgan |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956, Turkey. |
| authorships[5].author.id | https://openalex.org/A5054767162 |
| authorships[5].author.orcid | https://orcid.org/0000-0003-0557-6044 |
| authorships[5].author.display_name | Canan Atılgan |
| authorships[5].countries | TR |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I134235054 |
| authorships[5].affiliations[0].raw_affiliation_string | Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956, Turkey. |
| authorships[5].institutions[0].id | https://openalex.org/I134235054 |
| authorships[5].institutions[0].ror | https://ror.org/049asqa32 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I134235054 |
| authorships[5].institutions[0].country_code | TR |
| authorships[5].institutions[0].display_name | Sabancı Üniversitesi |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Canan Atilgan |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla 34956, Turkey. |
| authorships[6].author.id | https://openalex.org/A5084130869 |
| authorships[6].author.orcid | https://orcid.org/0000-0001-6861-7849 |
| authorships[6].author.display_name | Özlem Taştan Bishop |
| authorships[6].countries | ZA |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I203238179 |
| authorships[6].affiliations[0].raw_affiliation_string | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| authorships[6].institutions[0].id | https://openalex.org/I203238179 |
| authorships[6].institutions[0].ror | https://ror.org/016sewp10 |
| authorships[6].institutions[0].type | education |
| authorships[6].institutions[0].lineage | https://openalex.org/I203238179 |
| authorships[6].institutions[0].country_code | ZA |
| authorships[6].institutions[0].display_name | Rhodes University |
| authorships[6].author_position | last |
| authorships[6].raw_author_name | Özlem Tastan Bishop |
| authorships[6].is_corresponding | True |
| authorships[6].raw_affiliation_strings | Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 640, South Africa |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdf |
| open_access.oa_status | green |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | MODE-TASK: Large-scale protein motion tools |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10044 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9998999834060669 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Protein Structure and Dynamics |
| related_works | https://openalex.org/W1516095885, https://openalex.org/W4231704780, https://openalex.org/W2158573927, https://openalex.org/W2398058485, https://openalex.org/W1981336497, https://openalex.org/W4206079007, https://openalex.org/W2108921801, https://openalex.org/W254965819, https://openalex.org/W3156231268, https://openalex.org/W4205365843 |
| cited_by_count | 1 |
| counts_by_year[0].year | 2018 |
| counts_by_year[0].cited_by_count | 1 |
| locations_count | 1 |
| best_oa_location.id | doi:10.1101/217505 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4306402567 |
| best_oa_location.source.issn | |
| best_oa_location.source.type | repository |
| best_oa_location.source.is_oa | False |
| best_oa_location.source.issn_l | |
| best_oa_location.source.is_core | False |
| best_oa_location.source.is_in_doaj | False |
| best_oa_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| best_oa_location.source.host_organization | https://openalex.org/I2750212522 |
| best_oa_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| best_oa_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| best_oa_location.license | cc-by-nc |
| best_oa_location.pdf_url | https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdf |
| best_oa_location.version | acceptedVersion |
| best_oa_location.raw_type | posted-content |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by-nc |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | False |
| best_oa_location.raw_source_name | |
| best_oa_location.landing_page_url | https://doi.org/10.1101/217505 |
| primary_location.id | doi:10.1101/217505 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4306402567 |
| primary_location.source.issn | |
| primary_location.source.type | repository |
| primary_location.source.is_oa | False |
| primary_location.source.issn_l | |
| primary_location.source.is_core | False |
| primary_location.source.is_in_doaj | False |
| primary_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| primary_location.source.host_organization | https://openalex.org/I2750212522 |
| primary_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| primary_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| primary_location.license | cc-by-nc |
| primary_location.pdf_url | https://www.biorxiv.org/content/biorxiv/early/2017/11/10/217505.full.pdf |
| primary_location.version | acceptedVersion |
| primary_location.raw_type | posted-content |
| primary_location.license_id | https://openalex.org/licenses/cc-by-nc |
| primary_location.is_accepted | True |
| primary_location.is_published | False |
| primary_location.raw_source_name | |
| primary_location.landing_page_url | https://doi.org/10.1101/217505 |
| publication_date | 2017-11-10 |
| publication_year | 2017 |
| referenced_works | https://openalex.org/W2113994268, https://openalex.org/W2292301738, https://openalex.org/W2561248324, https://openalex.org/W2011301426, https://openalex.org/W2060300932, https://openalex.org/W2147988069, https://openalex.org/W2510012235, https://openalex.org/W1965092590, https://openalex.org/W2139047213, https://openalex.org/W2596679549, https://openalex.org/W2187089797, https://openalex.org/W2101234009 |
| referenced_works_count | 12 |
| abstract_inverted_index., | 74 |
| abstract_inverted_index.. | 86 |
| abstract_inverted_index.a | 3, 26, 40 |
| abstract_inverted_index.MD | 56 |
| abstract_inverted_index.as | 37 |
| abstract_inverted_index.at | 84 |
| abstract_inverted_index.in | 76 |
| abstract_inverted_index.is | 68 |
| abstract_inverted_index.of | 42, 50 |
| abstract_inverted_index.on | 32 |
| abstract_inverted_index.so | 36 |
| abstract_inverted_index.to | 38, 44 |
| abstract_inverted_index.and | 13, 46, 61, 67, 78 |
| abstract_inverted_index.are | 58 |
| abstract_inverted_index.for | 53, 70 |
| abstract_inverted_index.has | 64 |
| abstract_inverted_index.C++. | 79 |
| abstract_inverted_index.Mode | 28 |
| abstract_inverted_index.also | 24 |
| abstract_inverted_index.been | 65 |
| abstract_inverted_index.from | 72 |
| abstract_inverted_index.long | 55 |
| abstract_inverted_index.tool | 30 |
| abstract_inverted_index.ways | 43 |
| abstract_inverted_index.Model | 35 |
| abstract_inverted_index.based | 31 |
| abstract_inverted_index.novel | 4 |
| abstract_inverted_index.using | 19 |
| abstract_inverted_index.which | 54 |
| abstract_inverted_index.Normal | 27 |
| abstract_inverted_index.Python | 77 |
| abstract_inverted_index.suite, | 6 |
| abstract_inverted_index.Network | 34 |
| abstract_inverted_index.Summary | 1 |
| abstract_inverted_index.analyse | 45 |
| abstract_inverted_index.compare | 47 |
| abstract_inverted_index.motions | 49 |
| abstract_inverted_index.protein | 51 |
| abstract_inverted_index.provide | 39 |
| abstract_inverted_index.variety | 41 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Analysis | 29 |
| abstract_inverted_index.Neighbor | 16 |
| abstract_inverted_index.Scaling, | 12 |
| abstract_inverted_index.download | 71 |
| abstract_inverted_index.dynamics | 21 |
| abstract_inverted_index.includes | 25 |
| abstract_inverted_index.software | 5 |
| abstract_inverted_index.Analysis, | 10 |
| abstract_inverted_index.Component | 9 |
| abstract_inverted_index.Embedding | 17 |
| abstract_inverted_index.MODE-TASK | 23, 63 |
| abstract_inverted_index.Principle | 8 |
| abstract_inverted_index.available | 69, 83 |
| abstract_inverted_index.complexes | 52 |
| abstract_inverted_index.comprises | 7 |
| abstract_inverted_index.molecular | 20 |
| abstract_inverted_index.MODE-TASK, | 2 |
| abstract_inverted_index.Stochastic | 15 |
| abstract_inverted_index.techniques | 18 |
| abstract_inverted_index.Anisotropic | 33 |
| abstract_inverted_index.implemented | 75 |
| abstract_inverted_index.information | 81 |
| abstract_inverted_index.large-scale | 48 |
| abstract_inverted_index.simulations | 57 |
| abstract_inverted_index.Availability | 60 |
| abstract_inverted_index.prohibitive. | 59 |
| abstract_inverted_index.Documentation | 82 |
| abstract_inverted_index.Supplementary | 80 |
| abstract_inverted_index.open-sourced, | 66 |
| abstract_inverted_index.t-Distributed | 14 |
| abstract_inverted_index.trajectories. | 22 |
| abstract_inverted_index.Implementation | 62 |
| abstract_inverted_index.Multidimensional | 11 |
| abstract_inverted_index.http://mode-task.readthedocs.io | 85 |
| abstract_inverted_index.https://github.com/RUBi-ZA/MODE-TASK | 73 |
| cited_by_percentile_year.max | 94 |
| cited_by_percentile_year.min | 90 |
| corresponding_author_ids | https://openalex.org/A5084130869 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 7 |
| corresponding_institution_ids | https://openalex.org/I203238179 |
| citation_normalized_percentile.value | 0.51243597 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |