Modular programming of interaction and geometric specificity enables assembly of complex DNA origami nanostructures Article Swipe
Rupam Saha
,
Daichi Hayakawa
,
Thomas E. Videbæk
,
Mason Price
,
Wei-Shao Wei
,
Juanita Pombo
,
Daniel Linden Duke
,
Gaurav Arya
,
Gregory M. Grason
,
W. Benjamin Rogers
,
Seth Fraden
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41467-025-66195-9
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1038/s41467-025-66195-9
Self-assembly of nanoscale building blocks with programmable geometries and interactions offers a powerful route to engineer materials that mimic the complexity of biological structures. DNA origami provides an exceptional platform for this purpose, enabling precise control over subunit shape, binding angles, and interaction specificity. Here we present a modular DNA origami design approach to address the challenges of assembling geometrically complex nanoscale structures, including those with nonuniform curvatures. This approach features a core structure that completely conserves the scaffold routing across different designs and preserves more than 70% of the DNA staples between designs, dramatically reducing both cost and effort, while enabling precise and independent programming of subunit interactions and binding angles through adjustable overhang lengths and sequences. Using cryogenic electron microscopy, gel electrophoresis, and coarse-grained simulations, we validate a set of robust design rules and demonstrate the assembly of diverse self-limiting structures, including anisotropic shells, a T = 13 icosahedral shell, and a toroid with globally varying curvature. This modular strategy provides an efficient and cost-effective framework for the synthetic fabrication of complex nanostructures.
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- article
- Language
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- Landing Page
- https://doi.org/10.1038/s41467-025-66195-9
- https://www.nature.com/articles/s41467-025-66195-9_reference.pdf
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- 66
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Modular programming of interaction and geometric specificity enables assembly of complex DNA origami nanostructuresWork title
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2025Year of publication
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2025-12-11Full publication date if available
- Authors
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Rupam Saha, Daichi Hayakawa, Thomas E. Videbæk, Mason Price, Wei-Shao Wei, Juanita Pombo, Daniel Linden Duke, Gaurav Arya, Gregory M. Grason, W. Benjamin Rogers, Seth FradenList of authors in order
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https://doi.org/10.1038/s41467-025-66195-9Publisher landing page
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https://www.nature.com/articles/s41467-025-66195-9_reference.pdfDirect link to full text PDF
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://www.nature.com/articles/s41467-025-66195-9_reference.pdfDirect OA link when available
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0Total citation count in OpenAlex
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| referenced_works | https://openalex.org/W2078507839, https://openalex.org/W2164379005, https://openalex.org/W2044209150, https://openalex.org/W2084408879, https://openalex.org/W2052566608, https://openalex.org/W2049106847, https://openalex.org/W2329213810, https://openalex.org/W4408278645, https://openalex.org/W2126961173, https://openalex.org/W2158346543, https://openalex.org/W2773376021, https://openalex.org/W2519539312, https://openalex.org/W3177828909, https://openalex.org/W2099737063, https://openalex.org/W2129096474, https://openalex.org/W2014845274, https://openalex.org/W2100473511, https://openalex.org/W2553366479, https://openalex.org/W4312095041, https://openalex.org/W2774823587, https://openalex.org/W3168906023, https://openalex.org/W4306641902, https://openalex.org/W4400344944, https://openalex.org/W4400444125, https://openalex.org/W4391594213, https://openalex.org/W4404789483, https://openalex.org/W4405648459, https://openalex.org/W2068289663, https://openalex.org/W4385754058, https://openalex.org/W2536940746, https://openalex.org/W4409640425, https://openalex.org/W4396948762, https://openalex.org/W4396977870, https://openalex.org/W2404474364, https://openalex.org/W4412150871, https://openalex.org/W4200432904, https://openalex.org/W4308054136, https://openalex.org/W2442878865, https://openalex.org/W2773368957, https://openalex.org/W4391718605, https://openalex.org/W4413343631, https://openalex.org/W2148782423, https://openalex.org/W2055566196, https://openalex.org/W2174021414, https://openalex.org/W1568631168, https://openalex.org/W2606377251, https://openalex.org/W2951611668, https://openalex.org/W4414081164, https://openalex.org/W4416925564, https://openalex.org/W2900075489, https://openalex.org/W2885829084, https://openalex.org/W2036336773, https://openalex.org/W2915563329, https://openalex.org/W2040253999, https://openalex.org/W4385452191, https://openalex.org/W4395662582, https://openalex.org/W2049721533, https://openalex.org/W4205202540, https://openalex.org/W2735055344, https://openalex.org/W2029101220, https://openalex.org/W3213779066, https://openalex.org/W2953320394, https://openalex.org/W2734356283, https://openalex.org/W2962376770, https://openalex.org/W4281962041, https://openalex.org/W3029411550 |
| referenced_works_count | 66 |
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