Molecular characterization and 3D Modeling of p62 in Grass Carp (Ctenopharyngodon Idella) Article Swipe
Dan Wang
,
Qingqing Liu
,
Hong Zhou
·
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.56028/aetr.6.1.296.2023
YOU?
·
· 2023
· Open Access
·
· DOI: https://doi.org/10.56028/aetr.6.1.296.2023
P62 is a ubiquitin-binding protein that plays a key role in biological pathways including autophagy and protein degradation. In this study, we analyzed the protein sequence of grass carp p62 (gcp62) and its 3D structure was predicated. The full-length cDNA of gcp62 was 1425 bp, and encoded a 474-aa protein. Multiple sequence alignment analysis showed that gcp62 shared 40.82~41.80% amino acid identities with its orthologues of human, mouse and tropical clawed frog, as well as relatively high identities (63.28 and 78.71% respectively) with yellow catfish and zebrafish p62. The phylogenetic analysis showed that gcp62 has close relationship with its orthologues in common carp and zebrafish, but differs from its homologs in mammalian species. Like in mammals, gcp62 was predicted to contain three conserved domains, the N-terminal Phox and Bem1p (PB1) domain, the ZZ domain and the C-terminal ubiquitin-associated (UBA)domain. This is the first time to construct the 3D structure of fish p62 and the high similarity of p62 structure between human and fish indicates the functional conservation in vertebrates.
Related Topics
Concepts
Grass carp
Zebrafish
Biology
Catfish
Ubiquitin
Peptide sequence
Conserved sequence
Sequence alignment
Genetics
Multiple sequence alignment
Gene
Phylogenetic tree
Amino acid
Complementary DNA
Structural similarity
Cell biology
Fish <Actinopterygii>
Biochemistry
Fishery
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.56028/aetr.6.1.296.2023
- https://madison-proceedings.com/index.php/aetr/article/download/1267/1266
- OA Status
- diamond
- References
- 11
- Related Works
- 10
- OpenAlex ID
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All OpenAlex metadata
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https://doi.org/10.56028/aetr.6.1.296.2023Digital Object Identifier
- Title
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Molecular characterization and 3D Modeling of p62 in Grass Carp (Ctenopharyngodon Idella)Work title
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articleOpenAlex work type
- Language
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enPrimary language
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2023Year of publication
- Publication date
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2023-06-20Full publication date if available
- Authors
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Dan Wang, Qingqing Liu, Hong ZhouList of authors in order
- Landing page
-
https://doi.org/10.56028/aetr.6.1.296.2023Publisher landing page
- PDF URL
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https://madison-proceedings.com/index.php/aetr/article/download/1267/1266Direct link to full text PDF
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YesWhether a free full text is available
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diamondOpen access status per OpenAlex
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https://madison-proceedings.com/index.php/aetr/article/download/1267/1266Direct OA link when available
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Grass carp, Zebrafish, Biology, Catfish, Ubiquitin, Peptide sequence, Conserved sequence, Sequence alignment, Genetics, Multiple sequence alignment, Gene, Phylogenetic tree, Amino acid, Complementary DNA, Structural similarity, Cell biology, Fish
, Biochemistry, Fishery Top concepts (fields/topics) attached by OpenAlex - Cited by
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| abstract_inverted_index.p62 | 29, 151, 157 |
| abstract_inverted_index.the | 23, 124, 131, 135, 141, 146, 153, 164 |
| abstract_inverted_index.was | 35, 42, 117 |
| abstract_inverted_index.1425 | 43 |
| abstract_inverted_index.Like | 113 |
| abstract_inverted_index.Phox | 126 |
| abstract_inverted_index.This | 139 |
| abstract_inverted_index.acid | 60 |
| abstract_inverted_index.cDNA | 39 |
| abstract_inverted_index.carp | 28, 102 |
| abstract_inverted_index.fish | 150, 162 |
| abstract_inverted_index.from | 107 |
| abstract_inverted_index.high | 76, 154 |
| abstract_inverted_index.p62. | 87 |
| abstract_inverted_index.role | 9 |
| abstract_inverted_index.that | 5, 55, 92 |
| abstract_inverted_index.this | 19 |
| abstract_inverted_index.time | 143 |
| abstract_inverted_index.well | 73 |
| abstract_inverted_index.with | 62, 82, 97 |
| abstract_inverted_index.(PB1) | 129 |
| abstract_inverted_index.Bem1p | 128 |
| abstract_inverted_index.amino | 59 |
| abstract_inverted_index.close | 95 |
| abstract_inverted_index.first | 142 |
| abstract_inverted_index.frog, | 71 |
| abstract_inverted_index.gcp62 | 41, 56, 93, 116 |
| abstract_inverted_index.grass | 27 |
| abstract_inverted_index.human | 160 |
| abstract_inverted_index.mouse | 67 |
| abstract_inverted_index.plays | 6 |
| abstract_inverted_index.three | 121 |
| abstract_inverted_index.(63.28 | 78 |
| abstract_inverted_index.474-aa | 48 |
| abstract_inverted_index.78.71% | 80 |
| abstract_inverted_index.clawed | 70 |
| abstract_inverted_index.common | 101 |
| abstract_inverted_index.domain | 133 |
| abstract_inverted_index.human, | 66 |
| abstract_inverted_index.shared | 57 |
| abstract_inverted_index.showed | 54, 91 |
| abstract_inverted_index.study, | 20 |
| abstract_inverted_index.yellow | 83 |
| abstract_inverted_index.(gcp62) | 30 |
| abstract_inverted_index.between | 159 |
| abstract_inverted_index.catfish | 84 |
| abstract_inverted_index.contain | 120 |
| abstract_inverted_index.differs | 106 |
| abstract_inverted_index.domain, | 130 |
| abstract_inverted_index.encoded | 46 |
| abstract_inverted_index.protein | 4, 16, 24 |
| abstract_inverted_index.Multiple | 50 |
| abstract_inverted_index.analysis | 53, 90 |
| abstract_inverted_index.analyzed | 22 |
| abstract_inverted_index.domains, | 123 |
| abstract_inverted_index.homologs | 109 |
| abstract_inverted_index.mammals, | 115 |
| abstract_inverted_index.pathways | 12 |
| abstract_inverted_index.protein. | 49 |
| abstract_inverted_index.sequence | 25, 51 |
| abstract_inverted_index.species. | 112 |
| abstract_inverted_index.tropical | 69 |
| abstract_inverted_index.alignment | 52 |
| abstract_inverted_index.autophagy | 14 |
| abstract_inverted_index.conserved | 122 |
| abstract_inverted_index.construct | 145 |
| abstract_inverted_index.including | 13 |
| abstract_inverted_index.indicates | 163 |
| abstract_inverted_index.mammalian | 111 |
| abstract_inverted_index.predicted | 118 |
| abstract_inverted_index.structure | 34, 148, 158 |
| abstract_inverted_index.zebrafish | 86 |
| abstract_inverted_index.C-terminal | 136 |
| abstract_inverted_index.N-terminal | 125 |
| abstract_inverted_index.biological | 11 |
| abstract_inverted_index.functional | 165 |
| abstract_inverted_index.identities | 61, 77 |
| abstract_inverted_index.relatively | 75 |
| abstract_inverted_index.similarity | 155 |
| abstract_inverted_index.zebrafish, | 104 |
| abstract_inverted_index.full-length | 38 |
| abstract_inverted_index.orthologues | 64, 99 |
| abstract_inverted_index.predicated. | 36 |
| abstract_inverted_index.(UBA)domain. | 138 |
| abstract_inverted_index.40.82~41.80% | 58 |
| abstract_inverted_index.conservation | 166 |
| abstract_inverted_index.degradation. | 17 |
| abstract_inverted_index.phylogenetic | 89 |
| abstract_inverted_index.relationship | 96 |
| abstract_inverted_index.vertebrates. | 168 |
| abstract_inverted_index.respectively) | 81 |
| abstract_inverted_index.ubiquitin-binding | 3 |
| abstract_inverted_index.ubiquitin-associated | 137 |
| cited_by_percentile_year | |
| corresponding_author_ids | https://openalex.org/A5006386397 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 3 |
| corresponding_institution_ids | https://openalex.org/I150229711 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/15 |
| sustainable_development_goals[0].score | 0.5400000214576721 |
| sustainable_development_goals[0].display_name | Life in Land |
| citation_normalized_percentile.value | 0.18458056 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |