Multiscale mapping of transcriptomic signatures for cardiotoxic drugs Article Swipe
YOU?
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· 2021
· Open Access
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· DOI: https://doi.org/10.1101/2021.11.02.466774
Drug-induced gene expression profiles can identify potential mechanisms of toxicity. We focused on obtaining signatures for cardiotoxicity of FDA-approved tyrosine kinase inhibitors (TKIs) in human induced pluripotent stem cell-derived cardiomyocytes. Using bulk transcriptomics profiles, we applied singular value decomposition to identify drug-selective patterns in cell lines obtained from multiple healthy human subjects. Cellular pathways affected by highly cardiotoxic TKIs include energy metabolism, contractile, and extracellular matrix dynamics. Projecting these pathways to single cell expression profiles indicates that TKI responses can be evoked in both cardiomyocytes and fibroblasts. Whole genome sequences of the cell lines, using outlier responses enabled us to correctly reidentify a genomic variant associated with anthracycline cardiotoxicity and predict genomic variants potentially associated with TKI cardiotoxicity. We conclude that mRNA expression profiles when integrated with publicly available genomic, pathway, and single cell transcriptomic datasets, provide multiscale predictive understanding of cardiotoxicity for drug development and patient stratification. One sentence summary Genes, pathways, and cell types of the human heart associated with antineoplastic drug cardiotoxicity.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2021.11.02.466774
- https://www.biorxiv.org/content/biorxiv/early/2023/03/14/2021.11.02.466774.full.pdf
- OA Status
- green
- Cited By
- 2
- References
- 100
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3213454058
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3213454058Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2021.11.02.466774Digital Object Identifier
- Title
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Multiscale mapping of transcriptomic signatures for cardiotoxic drugsWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
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2021Year of publication
- Publication date
-
2021-11-04Full publication date if available
- Authors
-
Jens Hansen, Yuguang Xiong, Priyanka Dhanan, Bin Hu, Arjun Singh Yadaw, Gomathi Jayaraman, Rosa E. Tolentino, Yibang Chen, Kristin G. Beaumont, Robert Sebra, D. Vidović, Stephan C. Schürer, Joseph Goldfarb, James M. Gallo, Marc R. Birtwistle, Eric A. Sobie, Evren U. Azeloglu, Seth Berger, Angel Chan, Christoph Schaniel, Nicole Dubois, Ravi IyengarList of authors in order
- Landing page
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https://doi.org/10.1101/2021.11.02.466774Publisher landing page
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https://www.biorxiv.org/content/biorxiv/early/2023/03/14/2021.11.02.466774.full.pdfDirect link to full text PDF
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YesWhether a free full text is available
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greenOpen access status per OpenAlex
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https://www.biorxiv.org/content/biorxiv/early/2023/03/14/2021.11.02.466774.full.pdfDirect OA link when available
- Concepts
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Cardiotoxicity, Transcriptome, Biology, Computational biology, Gene expression profiling, Induced pluripotent stem cell, Bioinformatics, Gene expression, Pharmacology, Gene, Genetics, Embryonic stem cell, ChemotherapyTop concepts (fields/topics) attached by OpenAlex
- Cited by
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2Total citation count in OpenAlex
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2025: 1, 2024: 1Per-year citation counts (last 5 years)
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100Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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| primary_topic.display_name | Chemotherapy-induced cardiotoxicity and mitigation |
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| primary_location.raw_type | posted-content |
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| publication_date | 2021-11-04 |
| publication_year | 2021 |
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| abstract_inverted_index.evoked | 82 |
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