nextgenusfs/funannotate: funannotate v1.7.2 Article Swipe

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Jon Love , Jon Palmer , Jason Stajich , Tyler Esser , Erik K. Kastman , Daniel R. Bogema , David A. Winter ·

YOU? · · 2019 · Open Access · · DOI: https://doi.org/10.5281/zenodo.3594559 · OA: W3215840593

busco internal run now uses the local augustus config path, so hopefully write access to <code>$AUGUSTUS_CONFIG_PATH</code> is no longer required long reads are now processed to remove forward slashes from names if present -- this was causing problems with PASA #326 #250 added augustus hints file generation when using RNA-seq data. Also added a check for <code>--transcript_evidence</code> if found in <code>--transcript_alignments</code>, ie so extra transcripts can be added instead of only those used to generate alignments in <code>funannotate train</code>. #360 fix typo in <code>funannotate check</code> fix for proteinortho issue in <code>funannotate compare</code> #350