NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis Article Swipe
Jochen Singer
,
Hans‐Joachim Ruscheweyh
,
Ariane Leoni Hofmann
,
Thomas Thurnherr
,
Franziska Singer
,
Nora C. Toussaint
,
Charlotte K.Y. Ng
,
Salvatore Piscuoglio
,
Christian Beisel
,
Gerhard Christofori
,
Reinhard Dummer
,
Michael N. Hall
,
Wilhelm Krek
,
Mitchell P. Levesque
,
Markus G. Manz
,
Holger Moch
,
Andreas Papassotiropoulos
,
Daniel J. Stekhoven
,
Peter J. Wild
,
Thomas Wüst
,
Bernd Rinn
,
Niko Beerenwinkel
·
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/btx540
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/btx540
Motivation Next-generation sequencing is now an established method in genomics, and massive amounts of sequencing data are being generated on a regular basis. Analysis of the sequencing data is typically performed by lab-specific in-house solutions, but the agreement of results from different facilities is often small. General standards for quality control, reproducibility and documentation are missing. Results We developed NGS-pipe, a flexible, transparent and easy-to-use framework for the design of pipelines to analyze whole-exome, whole-genome and transcriptome sequencing data. NGS-pipe facilitates the harmonization of genomic data analysis by supporting quality control, documentation, reproducibility, parallelization and easy adaptation to other NGS experiments. Availability and implementation https://github.com/cbg-ethz/NGS-pipe
Related Topics
Concepts
Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/bioinformatics/btx540
- https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdf
- OA Status
- hybrid
- Cited By
- 33
- References
- 6
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2748728020
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2748728020Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/bioinformatics/btx540Digital Object Identifier
- Title
-
NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysisWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2017Year of publication
- Publication date
-
2017-08-26Full publication date if available
- Authors
-
Jochen Singer, Hans‐Joachim Ruscheweyh, Ariane Leoni Hofmann, Thomas Thurnherr, Franziska Singer, Nora C. Toussaint, Charlotte K.Y. Ng, Salvatore Piscuoglio, Christian Beisel, Gerhard Christofori, Reinhard Dummer, Michael N. Hall, Wilhelm Krek, Mitchell P. Levesque, Markus G. Manz, Holger Moch, Andreas Papassotiropoulos, Daniel J. Stekhoven, Peter J. Wild, Thomas Wüst, Bernd Rinn, Niko BeerenwinkelList of authors in order
- Landing page
-
https://doi.org/10.1093/bioinformatics/btx540Publisher landing page
- PDF URL
-
https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
hybridOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdfDirect OA link when available
- Concepts
-
Computer science, Documentation, Genomics, DNA sequencing, Exome sequencing, Exome, Pipeline (software), Pipeline transport, Computational biology, Data mining, Genome, Biology, Genetics, DNA, Programming language, Engineering, Mutation, Gene, Environmental engineeringTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
33Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2024: 1, 2023: 7, 2022: 3, 2021: 6Per-year citation counts (last 5 years)
- References (count)
-
6Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2748728020 |
|---|---|
| doi | https://doi.org/10.1093/bioinformatics/btx540 |
| ids.doi | https://doi.org/10.3929/ethz-b-000235399 |
| ids.mag | 2748728020 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/28968639 |
| ids.openalex | https://openalex.org/W2748728020 |
| fwci | 1.87060593 |
| mesh[0].qualifier_ui | Q000379 |
| mesh[0].descriptor_ui | D020869 |
| mesh[0].is_major_topic | False |
| mesh[0].qualifier_name | methods |
| mesh[0].descriptor_name | Gene Expression Profiling |
| mesh[1].qualifier_ui | Q000592 |
| mesh[1].descriptor_ui | D020869 |
| mesh[1].is_major_topic | False |
| mesh[1].qualifier_name | standards |
| mesh[1].descriptor_name | Gene Expression Profiling |
| mesh[2].qualifier_ui | Q000379 |
| mesh[2].descriptor_ui | D023281 |
| mesh[2].is_major_topic | False |
| mesh[2].qualifier_name | methods |
| mesh[2].descriptor_name | Genomics |
| mesh[3].qualifier_ui | Q000379 |
| mesh[3].descriptor_ui | D059014 |
| mesh[3].is_major_topic | False |
| mesh[3].qualifier_name | methods |
| mesh[3].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[4].qualifier_ui | Q000592 |
| mesh[4].descriptor_ui | D059014 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | standards |
| mesh[4].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D006801 |
| mesh[5].is_major_topic | False |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | Humans |
| mesh[6].qualifier_ui | Q000235 |
| mesh[6].descriptor_ui | D009369 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | genetics |
| mesh[6].descriptor_name | Neoplasms |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D015203 |
| mesh[7].is_major_topic | False |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | Reproducibility of Results |
| mesh[8].qualifier_ui | Q000379 |
| mesh[8].descriptor_ui | D017422 |
| mesh[8].is_major_topic | False |
| mesh[8].qualifier_name | methods |
| mesh[8].descriptor_name | Sequence Analysis, DNA |
| mesh[9].qualifier_ui | Q000592 |
| mesh[9].descriptor_ui | D017422 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | standards |
| mesh[9].descriptor_name | Sequence Analysis, DNA |
| mesh[10].qualifier_ui | Q000379 |
| mesh[10].descriptor_ui | D017423 |
| mesh[10].is_major_topic | False |
| mesh[10].qualifier_name | methods |
| mesh[10].descriptor_name | Sequence Analysis, RNA |
| mesh[11].qualifier_ui | Q000592 |
| mesh[11].descriptor_ui | D017423 |
| mesh[11].is_major_topic | False |
| mesh[11].qualifier_name | standards |
| mesh[11].descriptor_name | Sequence Analysis, RNA |
| mesh[12].qualifier_ui | |
| mesh[12].descriptor_ui | D012984 |
| mesh[12].is_major_topic | True |
| mesh[12].qualifier_name | |
| mesh[12].descriptor_name | Software |
| mesh[13].qualifier_ui | Q000379 |
| mesh[13].descriptor_ui | D020869 |
| mesh[13].is_major_topic | False |
| mesh[13].qualifier_name | methods |
| mesh[13].descriptor_name | Gene Expression Profiling |
| mesh[14].qualifier_ui | Q000592 |
| mesh[14].descriptor_ui | D020869 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | standards |
| mesh[14].descriptor_name | Gene Expression Profiling |
| mesh[15].qualifier_ui | Q000379 |
| mesh[15].descriptor_ui | D023281 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | methods |
| mesh[15].descriptor_name | Genomics |
| mesh[16].qualifier_ui | Q000379 |
| mesh[16].descriptor_ui | D059014 |
| mesh[16].is_major_topic | False |
| mesh[16].qualifier_name | methods |
| mesh[16].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[17].qualifier_ui | Q000592 |
| mesh[17].descriptor_ui | D059014 |
| mesh[17].is_major_topic | False |
| mesh[17].qualifier_name | standards |
| mesh[17].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[18].qualifier_ui | |
| mesh[18].descriptor_ui | D006801 |
| mesh[18].is_major_topic | False |
| mesh[18].qualifier_name | |
| mesh[18].descriptor_name | Humans |
| mesh[19].qualifier_ui | Q000235 |
| mesh[19].descriptor_ui | D009369 |
| mesh[19].is_major_topic | False |
| mesh[19].qualifier_name | genetics |
| mesh[19].descriptor_name | Neoplasms |
| mesh[20].qualifier_ui | |
| mesh[20].descriptor_ui | D015203 |
| mesh[20].is_major_topic | False |
| mesh[20].qualifier_name | |
| mesh[20].descriptor_name | Reproducibility of Results |
| mesh[21].qualifier_ui | Q000379 |
| mesh[21].descriptor_ui | D017422 |
| mesh[21].is_major_topic | False |
| mesh[21].qualifier_name | methods |
| mesh[21].descriptor_name | Sequence Analysis, DNA |
| mesh[22].qualifier_ui | Q000592 |
| mesh[22].descriptor_ui | D017422 |
| mesh[22].is_major_topic | False |
| mesh[22].qualifier_name | standards |
| mesh[22].descriptor_name | Sequence Analysis, DNA |
| mesh[23].qualifier_ui | Q000379 |
| mesh[23].descriptor_ui | D017423 |
| mesh[23].is_major_topic | False |
| mesh[23].qualifier_name | methods |
| mesh[23].descriptor_name | Sequence Analysis, RNA |
| mesh[24].qualifier_ui | Q000592 |
| mesh[24].descriptor_ui | D017423 |
| mesh[24].is_major_topic | False |
| mesh[24].qualifier_name | standards |
| mesh[24].descriptor_name | Sequence Analysis, RNA |
| mesh[25].qualifier_ui | |
| mesh[25].descriptor_ui | D012984 |
| mesh[25].is_major_topic | True |
| mesh[25].qualifier_name | |
| mesh[25].descriptor_name | Software |
| mesh[26].qualifier_ui | Q000379 |
| mesh[26].descriptor_ui | D020869 |
| mesh[26].is_major_topic | False |
| mesh[26].qualifier_name | methods |
| mesh[26].descriptor_name | Gene Expression Profiling |
| mesh[27].qualifier_ui | Q000592 |
| mesh[27].descriptor_ui | D020869 |
| mesh[27].is_major_topic | False |
| mesh[27].qualifier_name | standards |
| mesh[27].descriptor_name | Gene Expression Profiling |
| mesh[28].qualifier_ui | Q000379 |
| mesh[28].descriptor_ui | D023281 |
| mesh[28].is_major_topic | False |
| mesh[28].qualifier_name | methods |
| mesh[28].descriptor_name | Genomics |
| mesh[29].qualifier_ui | Q000379 |
| mesh[29].descriptor_ui | D059014 |
| mesh[29].is_major_topic | False |
| mesh[29].qualifier_name | methods |
| mesh[29].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[30].qualifier_ui | Q000592 |
| mesh[30].descriptor_ui | D059014 |
| mesh[30].is_major_topic | False |
| mesh[30].qualifier_name | standards |
| mesh[30].descriptor_name | High-Throughput Nucleotide Sequencing |
| mesh[31].qualifier_ui | |
| mesh[31].descriptor_ui | D006801 |
| mesh[31].is_major_topic | False |
| mesh[31].qualifier_name | |
| mesh[31].descriptor_name | Humans |
| mesh[32].qualifier_ui | Q000235 |
| mesh[32].descriptor_ui | D009369 |
| mesh[32].is_major_topic | False |
| mesh[32].qualifier_name | genetics |
| mesh[32].descriptor_name | Neoplasms |
| mesh[33].qualifier_ui | |
| mesh[33].descriptor_ui | D015203 |
| mesh[33].is_major_topic | False |
| mesh[33].qualifier_name | |
| mesh[33].descriptor_name | Reproducibility of Results |
| mesh[34].qualifier_ui | Q000379 |
| mesh[34].descriptor_ui | D017422 |
| mesh[34].is_major_topic | False |
| mesh[34].qualifier_name | methods |
| mesh[34].descriptor_name | Sequence Analysis, DNA |
| mesh[35].qualifier_ui | Q000592 |
| mesh[35].descriptor_ui | D017422 |
| mesh[35].is_major_topic | False |
| mesh[35].qualifier_name | standards |
| mesh[35].descriptor_name | Sequence Analysis, DNA |
| mesh[36].qualifier_ui | Q000379 |
| mesh[36].descriptor_ui | D017423 |
| mesh[36].is_major_topic | False |
| mesh[36].qualifier_name | methods |
| mesh[36].descriptor_name | Sequence Analysis, RNA |
| mesh[37].qualifier_ui | Q000592 |
| mesh[37].descriptor_ui | D017423 |
| mesh[37].is_major_topic | False |
| mesh[37].qualifier_name | standards |
| mesh[37].descriptor_name | Sequence Analysis, RNA |
| mesh[38].qualifier_ui | |
| mesh[38].descriptor_ui | D012984 |
| mesh[38].is_major_topic | True |
| mesh[38].qualifier_name | |
| mesh[38].descriptor_name | Software |
| type | article |
| title | NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis |
| awards[0].id | https://openalex.org/G1685932236 |
| awards[0].funder_id | https://openalex.org/F4320338335 |
| awards[0].display_name | |
| awards[0].funder_award_id | 609883 |
| awards[0].funder_display_name | H2020 European Research Council |
| awards[1].id | https://openalex.org/G3614459289 |
| awards[1].funder_id | https://openalex.org/F4320320924 |
| awards[1].display_name | |
| awards[1].funder_award_id | PZ00P3_168165 |
| awards[1].funder_display_name | Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung |
| biblio.issue | 1 |
| biblio.volume | 34 |
| biblio.last_page | 108 |
| biblio.first_page | 107 |
| topics[0].id | https://openalex.org/T10015 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9990000128746033 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1312 |
| topics[0].subfield.display_name | Molecular Biology |
| topics[0].display_name | Genomics and Phylogenetic Studies |
| topics[1].id | https://openalex.org/T11482 |
| topics[1].field.id | https://openalex.org/fields/13 |
| topics[1].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[1].score | 0.9944999814033508 |
| topics[1].domain.id | https://openalex.org/domains/1 |
| topics[1].domain.display_name | Life Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1312 |
| topics[1].subfield.display_name | Molecular Biology |
| topics[1].display_name | RNA modifications and cancer |
| topics[2].id | https://openalex.org/T11287 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9937000274658203 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1306 |
| topics[2].subfield.display_name | Cancer Research |
| topics[2].display_name | Cancer Genomics and Diagnostics |
| funders[0].id | https://openalex.org/F4320320924 |
| funders[0].ror | https://ror.org/00yjd3n13 |
| funders[0].display_name | Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung |
| funders[1].id | https://openalex.org/F4320338335 |
| funders[1].ror | https://ror.org/0472cxd90 |
| funders[1].display_name | H2020 European Research Council |
| is_xpac | False |
| apc_list.value | 3618 |
| apc_list.currency | USD |
| apc_list.value_usd | 3618 |
| apc_paid.value | 3618 |
| apc_paid.currency | USD |
| apc_paid.value_usd | 3618 |
| concepts[0].id | https://openalex.org/C41008148 |
| concepts[0].level | 0 |
| concepts[0].score | 0.6849509477615356 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[0].display_name | Computer science |
| concepts[1].id | https://openalex.org/C56666940 |
| concepts[1].level | 2 |
| concepts[1].score | 0.6452447772026062 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q788790 |
| concepts[1].display_name | Documentation |
| concepts[2].id | https://openalex.org/C189206191 |
| concepts[2].level | 4 |
| concepts[2].score | 0.5314356684684753 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q222046 |
| concepts[2].display_name | Genomics |
| concepts[3].id | https://openalex.org/C51679486 |
| concepts[3].level | 3 |
| concepts[3].score | 0.49941468238830566 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q380546 |
| concepts[3].display_name | DNA sequencing |
| concepts[4].id | https://openalex.org/C16671776 |
| concepts[4].level | 4 |
| concepts[4].score | 0.4553138017654419 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q5420592 |
| concepts[4].display_name | Exome sequencing |
| concepts[5].id | https://openalex.org/C10590036 |
| concepts[5].level | 5 |
| concepts[5].score | 0.43569493293762207 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q417664 |
| concepts[5].display_name | Exome |
| concepts[6].id | https://openalex.org/C43521106 |
| concepts[6].level | 2 |
| concepts[6].score | 0.4328889846801758 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q2165493 |
| concepts[6].display_name | Pipeline (software) |
| concepts[7].id | https://openalex.org/C175309249 |
| concepts[7].level | 2 |
| concepts[7].score | 0.42954155802726746 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q725864 |
| concepts[7].display_name | Pipeline transport |
| concepts[8].id | https://openalex.org/C70721500 |
| concepts[8].level | 1 |
| concepts[8].score | 0.391144722700119 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q177005 |
| concepts[8].display_name | Computational biology |
| concepts[9].id | https://openalex.org/C124101348 |
| concepts[9].level | 1 |
| concepts[9].score | 0.39019671082496643 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q172491 |
| concepts[9].display_name | Data mining |
| concepts[10].id | https://openalex.org/C141231307 |
| concepts[10].level | 3 |
| concepts[10].score | 0.31670165061950684 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q7020 |
| concepts[10].display_name | Genome |
| concepts[11].id | https://openalex.org/C86803240 |
| concepts[11].level | 0 |
| concepts[11].score | 0.1915070116519928 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[11].display_name | Biology |
| concepts[12].id | https://openalex.org/C54355233 |
| concepts[12].level | 1 |
| concepts[12].score | 0.11142036318778992 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[12].display_name | Genetics |
| concepts[13].id | https://openalex.org/C552990157 |
| concepts[13].level | 2 |
| concepts[13].score | 0.1095379889011383 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q7430 |
| concepts[13].display_name | DNA |
| concepts[14].id | https://openalex.org/C199360897 |
| concepts[14].level | 1 |
| concepts[14].score | 0.09811124205589294 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q9143 |
| concepts[14].display_name | Programming language |
| concepts[15].id | https://openalex.org/C127413603 |
| concepts[15].level | 0 |
| concepts[15].score | 0.09520533680915833 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q11023 |
| concepts[15].display_name | Engineering |
| concepts[16].id | https://openalex.org/C501734568 |
| concepts[16].level | 3 |
| concepts[16].score | 0.07423219084739685 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q42918 |
| concepts[16].display_name | Mutation |
| concepts[17].id | https://openalex.org/C104317684 |
| concepts[17].level | 2 |
| concepts[17].score | 0.073661208152771 |
| concepts[17].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[17].display_name | Gene |
| concepts[18].id | https://openalex.org/C87717796 |
| concepts[18].level | 1 |
| concepts[18].score | 0.0 |
| concepts[18].wikidata | https://www.wikidata.org/wiki/Q146326 |
| concepts[18].display_name | Environmental engineering |
| keywords[0].id | https://openalex.org/keywords/computer-science |
| keywords[0].score | 0.6849509477615356 |
| keywords[0].display_name | Computer science |
| keywords[1].id | https://openalex.org/keywords/documentation |
| keywords[1].score | 0.6452447772026062 |
| keywords[1].display_name | Documentation |
| keywords[2].id | https://openalex.org/keywords/genomics |
| keywords[2].score | 0.5314356684684753 |
| keywords[2].display_name | Genomics |
| keywords[3].id | https://openalex.org/keywords/dna-sequencing |
| keywords[3].score | 0.49941468238830566 |
| keywords[3].display_name | DNA sequencing |
| keywords[4].id | https://openalex.org/keywords/exome-sequencing |
| keywords[4].score | 0.4553138017654419 |
| keywords[4].display_name | Exome sequencing |
| keywords[5].id | https://openalex.org/keywords/exome |
| keywords[5].score | 0.43569493293762207 |
| keywords[5].display_name | Exome |
| keywords[6].id | https://openalex.org/keywords/pipeline |
| keywords[6].score | 0.4328889846801758 |
| keywords[6].display_name | Pipeline (software) |
| keywords[7].id | https://openalex.org/keywords/pipeline-transport |
| keywords[7].score | 0.42954155802726746 |
| keywords[7].display_name | Pipeline transport |
| keywords[8].id | https://openalex.org/keywords/computational-biology |
| keywords[8].score | 0.391144722700119 |
| keywords[8].display_name | Computational biology |
| keywords[9].id | https://openalex.org/keywords/data-mining |
| keywords[9].score | 0.39019671082496643 |
| keywords[9].display_name | Data mining |
| keywords[10].id | https://openalex.org/keywords/genome |
| keywords[10].score | 0.31670165061950684 |
| keywords[10].display_name | Genome |
| keywords[11].id | https://openalex.org/keywords/biology |
| keywords[11].score | 0.1915070116519928 |
| keywords[11].display_name | Biology |
| keywords[12].id | https://openalex.org/keywords/genetics |
| keywords[12].score | 0.11142036318778992 |
| keywords[12].display_name | Genetics |
| keywords[13].id | https://openalex.org/keywords/dna |
| keywords[13].score | 0.1095379889011383 |
| keywords[13].display_name | DNA |
| keywords[14].id | https://openalex.org/keywords/programming-language |
| keywords[14].score | 0.09811124205589294 |
| keywords[14].display_name | Programming language |
| keywords[15].id | https://openalex.org/keywords/engineering |
| keywords[15].score | 0.09520533680915833 |
| keywords[15].display_name | Engineering |
| keywords[16].id | https://openalex.org/keywords/mutation |
| keywords[16].score | 0.07423219084739685 |
| keywords[16].display_name | Mutation |
| keywords[17].id | https://openalex.org/keywords/gene |
| keywords[17].score | 0.073661208152771 |
| keywords[17].display_name | Gene |
| language | en |
| locations[0].id | doi:10.1093/bioinformatics/btx540 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S52395412 |
| locations[0].source.issn | 1367-4803, 1367-4811 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | False |
| locations[0].source.issn_l | 1367-4803 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | Bioinformatics |
| locations[0].source.host_organization | https://openalex.org/P4310311648 |
| locations[0].source.host_organization_name | Oxford University Press |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| locations[0].source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| locations[0].license | cc-by-nc |
| locations[0].pdf_url | https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by-nc |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Bioinformatics |
| locations[0].landing_page_url | https://doi.org/10.1093/bioinformatics/btx540 |
| locations[1].id | pmid:28968639 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Bioinformatics (Oxford, England) |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/28968639 |
| locations[2].id | pmh:oai:edoc.unibas.ch:56308 |
| locations[2].is_oa | False |
| locations[2].source.id | https://openalex.org/S4306401836 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | edoc (University of Basel) |
| locations[2].source.host_organization | https://openalex.org/I1850255 |
| locations[2].source.host_organization_name | University of Basel |
| locations[2].source.host_organization_lineage | https://openalex.org/I1850255 |
| locations[2].license | |
| locations[2].pdf_url | |
| locations[2].version | acceptedVersion |
| locations[2].raw_type | Article |
| locations[2].license_id | |
| locations[2].is_accepted | True |
| locations[2].is_published | False |
| locations[2].raw_source_name | |
| locations[2].landing_page_url | |
| locations[3].id | pmh:oai:pubmedcentral.nih.gov:5870795 |
| locations[3].is_oa | True |
| locations[3].source.id | https://openalex.org/S2764455111 |
| locations[3].source.issn | |
| locations[3].source.type | repository |
| locations[3].source.is_oa | False |
| locations[3].source.issn_l | |
| locations[3].source.is_core | False |
| locations[3].source.is_in_doaj | False |
| locations[3].source.display_name | PubMed Central |
| locations[3].source.host_organization | https://openalex.org/I1299303238 |
| locations[3].source.host_organization_name | National Institutes of Health |
| locations[3].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[3].license | |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | Text |
| locations[3].license_id | |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | |
| locations[3].landing_page_url | http://doi.org/10.1093/bioinformatics/btx540 |
| locations[4].id | pmh:oai:www.research-collection.ethz.ch:20.500.11850/235399 |
| locations[4].is_oa | True |
| locations[4].source.id | https://openalex.org/S4306402302 |
| locations[4].source.issn | |
| locations[4].source.type | repository |
| locations[4].source.is_oa | False |
| locations[4].source.issn_l | |
| locations[4].source.is_core | False |
| locations[4].source.is_in_doaj | False |
| locations[4].source.display_name | Repository for Publications and Research Data (ETH Zurich) |
| locations[4].source.host_organization | https://openalex.org/I35440088 |
| locations[4].source.host_organization_name | ETH Zurich |
| locations[4].source.host_organization_lineage | https://openalex.org/I35440088 |
| locations[4].license | cc-by-nc |
| locations[4].pdf_url | |
| locations[4].version | submittedVersion |
| locations[4].raw_type | info:eu-repo/semantics/article |
| locations[4].license_id | https://openalex.org/licenses/cc-by-nc |
| locations[4].is_accepted | False |
| locations[4].is_published | False |
| locations[4].raw_source_name | Bioinformatics, 34 (1) |
| locations[4].landing_page_url | http://hdl.handle.net/20.500.11850/235399 |
| locations[5].id | pmh:oai:www.research-collection.ethz.ch:20.500.11850/242711 |
| locations[5].is_oa | True |
| locations[5].source.id | https://openalex.org/S4306402302 |
| locations[5].source.issn | |
| locations[5].source.type | repository |
| locations[5].source.is_oa | False |
| locations[5].source.issn_l | |
| locations[5].source.is_core | False |
| locations[5].source.is_in_doaj | False |
| locations[5].source.display_name | Repository for Publications and Research Data (ETH Zurich) |
| locations[5].source.host_organization | https://openalex.org/I35440088 |
| locations[5].source.host_organization_name | ETH Zurich |
| locations[5].source.host_organization_lineage | https://openalex.org/I35440088 |
| locations[5].license | cc-by-nc |
| locations[5].pdf_url | |
| locations[5].version | submittedVersion |
| locations[5].raw_type | info:eu-repo/semantics/publishedVersion |
| locations[5].license_id | https://openalex.org/licenses/cc-by-nc |
| locations[5].is_accepted | False |
| locations[5].is_published | False |
| locations[5].raw_source_name | Bioinformatics, 34 (1) |
| locations[5].landing_page_url | http://hdl.handle.net/20.500.11850/242711 |
| locations[6].id | doi:10.3929/ethz-b-000235399 |
| locations[6].is_oa | True |
| locations[6].source.id | https://openalex.org/S7407051236 |
| locations[6].source.type | repository |
| locations[6].source.is_oa | False |
| locations[6].source.issn_l | |
| locations[6].source.is_core | False |
| locations[6].source.is_in_doaj | False |
| locations[6].source.display_name | ETH Zürich Research Collection |
| locations[6].source.host_organization | |
| locations[6].source.host_organization_name | |
| locations[6].license | |
| locations[6].pdf_url | |
| locations[6].version | |
| locations[6].raw_type | article-journal |
| locations[6].license_id | |
| locations[6].is_accepted | False |
| locations[6].is_published | |
| locations[6].raw_source_name | |
| locations[6].landing_page_url | https://doi.org/10.3929/ethz-b-000235399 |
| locations[7].id | doi:10.5167/uzh-140637 |
| locations[7].is_oa | True |
| locations[7].source.id | https://openalex.org/S7407051291 |
| locations[7].source.type | repository |
| locations[7].source.is_oa | False |
| locations[7].source.issn_l | |
| locations[7].source.is_core | False |
| locations[7].source.is_in_doaj | False |
| locations[7].source.display_name | Universität Zürich, ZORA |
| locations[7].source.host_organization | |
| locations[7].source.host_organization_name | |
| locations[7].license | |
| locations[7].pdf_url | |
| locations[7].version | |
| locations[7].raw_type | article-journal |
| locations[7].license_id | |
| locations[7].is_accepted | False |
| locations[7].is_published | |
| locations[7].raw_source_name | |
| locations[7].landing_page_url | https://doi.org/10.5167/uzh-140637 |
| indexed_in | crossref, datacite, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5054504245 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-0001-8625 |
| authorships[0].author.display_name | Jochen Singer |
| authorships[0].countries | CH |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[0].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[0].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[0].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[0].institutions[0].id | https://openalex.org/I35440088 |
| authorships[0].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[0].institutions[0].country_code | CH |
| authorships[0].institutions[0].display_name | ETH Zurich |
| authorships[0].institutions[1].id | https://openalex.org/I12708293 |
| authorships[0].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[0].institutions[1].type | nonprofit |
| authorships[0].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[0].institutions[1].country_code | CH |
| authorships[0].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Jochen Singer |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[1].author.id | https://openalex.org/A5006162777 |
| authorships[1].author.orcid | https://orcid.org/0000-0001-7473-6086 |
| authorships[1].author.display_name | Hans‐Joachim Ruscheweyh |
| authorships[1].countries | CH |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[1].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[1].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[1].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[1].affiliations[2].institution_ids | https://openalex.org/I35440088 |
| authorships[1].affiliations[2].raw_affiliation_string | Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[1].institutions[0].id | https://openalex.org/I35440088 |
| authorships[1].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[1].institutions[0].country_code | CH |
| authorships[1].institutions[0].display_name | ETH Zurich |
| authorships[1].institutions[1].id | https://openalex.org/I12708293 |
| authorships[1].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[1].institutions[1].type | nonprofit |
| authorships[1].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[1].institutions[1].country_code | CH |
| authorships[1].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Hans-Joachim Ruscheweyh |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland, Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[2].author.id | https://openalex.org/A5110507231 |
| authorships[2].author.orcid | |
| authorships[2].author.display_name | Ariane Leoni Hofmann |
| authorships[2].countries | CH |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[2].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[2].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[2].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[2].institutions[0].id | https://openalex.org/I35440088 |
| authorships[2].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[2].institutions[0].country_code | CH |
| authorships[2].institutions[0].display_name | ETH Zurich |
| authorships[2].institutions[1].id | https://openalex.org/I12708293 |
| authorships[2].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[2].institutions[1].type | nonprofit |
| authorships[2].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[2].institutions[1].country_code | CH |
| authorships[2].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Ariane L Hofmann |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[3].author.id | https://openalex.org/A5013321226 |
| authorships[3].author.orcid | |
| authorships[3].author.display_name | Thomas Thurnherr |
| authorships[3].countries | CH |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[3].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[3].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[3].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[3].institutions[0].id | https://openalex.org/I35440088 |
| authorships[3].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[3].institutions[0].country_code | CH |
| authorships[3].institutions[0].display_name | ETH Zurich |
| authorships[3].institutions[1].id | https://openalex.org/I12708293 |
| authorships[3].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[3].institutions[1].type | nonprofit |
| authorships[3].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[3].institutions[1].country_code | CH |
| authorships[3].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Thomas Thurnherr |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[4].author.id | https://openalex.org/A5005041697 |
| authorships[4].author.orcid | https://orcid.org/0000-0002-6017-1595 |
| authorships[4].author.display_name | Franziska Singer |
| authorships[4].countries | CH |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I12708293 |
| authorships[4].affiliations[0].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[4].affiliations[1].raw_affiliation_string | NEXUS Personalized Health Technologies, Zurich, Switzerland |
| authorships[4].institutions[0].id | https://openalex.org/I12708293 |
| authorships[4].institutions[0].ror | https://ror.org/002n09z45 |
| authorships[4].institutions[0].type | nonprofit |
| authorships[4].institutions[0].lineage | https://openalex.org/I12708293 |
| authorships[4].institutions[0].country_code | CH |
| authorships[4].institutions[0].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Franziska Singer |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[5].author.id | https://openalex.org/A5078378799 |
| authorships[5].author.orcid | https://orcid.org/0000-0001-7911-7647 |
| authorships[5].author.display_name | Nora C. Toussaint |
| authorships[5].countries | CH |
| authorships[5].affiliations[0].raw_affiliation_string | NEXUS Personalized Health Technologies, Zurich, Switzerland |
| authorships[5].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[5].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[5].institutions[0].id | https://openalex.org/I12708293 |
| authorships[5].institutions[0].ror | https://ror.org/002n09z45 |
| authorships[5].institutions[0].type | nonprofit |
| authorships[5].institutions[0].lineage | https://openalex.org/I12708293 |
| authorships[5].institutions[0].country_code | CH |
| authorships[5].institutions[0].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[5].author_position | middle |
| authorships[5].raw_author_name | Nora C Toussaint |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[6].author.id | https://openalex.org/A5057848295 |
| authorships[6].author.orcid | https://orcid.org/0000-0002-6100-0026 |
| authorships[6].author.display_name | Charlotte K.Y. Ng |
| authorships[6].countries | CH |
| authorships[6].affiliations[0].institution_ids | https://openalex.org/I2802542264 |
| authorships[6].affiliations[0].raw_affiliation_string | Institute of Pathology, University Hospital Basel, Basel, Switzerland |
| authorships[6].affiliations[1].institution_ids | https://openalex.org/I1850255 |
| authorships[6].affiliations[1].raw_affiliation_string | Department of Biomedicine, University of Basel, Basel, Switzerland |
| authorships[6].affiliations[2].institution_ids | https://openalex.org/I2802542264 |
| authorships[6].affiliations[2].raw_affiliation_string | Division of Gastroenterology and Hepatology, University Hospital Basel, Basel, Switzerland |
| authorships[6].institutions[0].id | https://openalex.org/I2802542264 |
| authorships[6].institutions[0].ror | https://ror.org/04k51q396 |
| authorships[6].institutions[0].type | healthcare |
| authorships[6].institutions[0].lineage | https://openalex.org/I2802542264 |
| authorships[6].institutions[0].country_code | CH |
| authorships[6].institutions[0].display_name | University Hospital of Basel |
| authorships[6].institutions[1].id | https://openalex.org/I1850255 |
| authorships[6].institutions[1].ror | https://ror.org/02s6k3f65 |
| authorships[6].institutions[1].type | education |
| authorships[6].institutions[1].lineage | https://openalex.org/I1850255 |
| authorships[6].institutions[1].country_code | CH |
| authorships[6].institutions[1].display_name | University of Basel |
| authorships[6].author_position | middle |
| authorships[6].raw_author_name | Charlotte K Y Ng |
| authorships[6].is_corresponding | False |
| authorships[6].raw_affiliation_strings | Department of Biomedicine, University of Basel, Basel, Switzerland, Division of Gastroenterology and Hepatology, University Hospital Basel, Basel, Switzerland, Institute of Pathology, University Hospital Basel, Basel, Switzerland |
| authorships[7].author.id | https://openalex.org/A5051087530 |
| authorships[7].author.orcid | https://orcid.org/0000-0003-2686-2939 |
| authorships[7].author.display_name | Salvatore Piscuoglio |
| authorships[7].countries | CH |
| authorships[7].affiliations[0].institution_ids | https://openalex.org/I2802542264 |
| authorships[7].affiliations[0].raw_affiliation_string | Institute of Pathology, University Hospital Basel, Basel, Switzerland |
| authorships[7].institutions[0].id | https://openalex.org/I2802542264 |
| authorships[7].institutions[0].ror | https://ror.org/04k51q396 |
| authorships[7].institutions[0].type | healthcare |
| authorships[7].institutions[0].lineage | https://openalex.org/I2802542264 |
| authorships[7].institutions[0].country_code | CH |
| authorships[7].institutions[0].display_name | University Hospital of Basel |
| authorships[7].author_position | middle |
| authorships[7].raw_author_name | Salvatore Piscuoglio |
| authorships[7].is_corresponding | False |
| authorships[7].raw_affiliation_strings | Institute of Pathology, University Hospital Basel, Basel, Switzerland |
| authorships[8].author.id | https://openalex.org/A5053668445 |
| authorships[8].author.orcid | https://orcid.org/0000-0001-5360-2193 |
| authorships[8].author.display_name | Christian Beisel |
| authorships[8].countries | CH |
| authorships[8].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[8].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[8].institutions[0].id | https://openalex.org/I35440088 |
| authorships[8].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[8].institutions[0].type | education |
| authorships[8].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[8].institutions[0].country_code | CH |
| authorships[8].institutions[0].display_name | ETH Zurich |
| authorships[8].author_position | middle |
| authorships[8].raw_author_name | Christian Beisel |
| authorships[8].is_corresponding | False |
| authorships[8].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[9].author.id | https://openalex.org/A5072271891 |
| authorships[9].author.orcid | https://orcid.org/0000-0002-8696-9896 |
| authorships[9].author.display_name | Gerhard Christofori |
| authorships[9].countries | CH |
| authorships[9].affiliations[0].institution_ids | https://openalex.org/I1850255 |
| authorships[9].affiliations[0].raw_affiliation_string | Department of Biomedicine, University of Basel, Basel, Switzerland |
| authorships[9].institutions[0].id | https://openalex.org/I1850255 |
| authorships[9].institutions[0].ror | https://ror.org/02s6k3f65 |
| authorships[9].institutions[0].type | education |
| authorships[9].institutions[0].lineage | https://openalex.org/I1850255 |
| authorships[9].institutions[0].country_code | CH |
| authorships[9].institutions[0].display_name | University of Basel |
| authorships[9].author_position | middle |
| authorships[9].raw_author_name | Gerhard Christofori |
| authorships[9].is_corresponding | False |
| authorships[9].raw_affiliation_strings | Department of Biomedicine, University of Basel, Basel, Switzerland |
| authorships[10].author.id | https://openalex.org/A5089297467 |
| authorships[10].author.orcid | https://orcid.org/0000-0002-2279-6906 |
| authorships[10].author.display_name | Reinhard Dummer |
| authorships[10].countries | CH |
| authorships[10].affiliations[0].institution_ids | https://openalex.org/I4210100468 |
| authorships[10].affiliations[0].raw_affiliation_string | Department of Dermatology, University Hospital Zurich, Zurich, Switzerland |
| authorships[10].institutions[0].id | https://openalex.org/I4210100468 |
| authorships[10].institutions[0].ror | https://ror.org/01462r250 |
| authorships[10].institutions[0].type | healthcare |
| authorships[10].institutions[0].lineage | https://openalex.org/I4210100468 |
| authorships[10].institutions[0].country_code | CH |
| authorships[10].institutions[0].display_name | University Hospital of Zurich |
| authorships[10].author_position | middle |
| authorships[10].raw_author_name | Reinhard Dummer |
| authorships[10].is_corresponding | False |
| authorships[10].raw_affiliation_strings | Department of Dermatology, University Hospital Zurich, Zurich, Switzerland |
| authorships[11].author.id | https://openalex.org/A5003476561 |
| authorships[11].author.orcid | https://orcid.org/0000-0002-2998-0757 |
| authorships[11].author.display_name | Michael N. Hall |
| authorships[11].countries | CH |
| authorships[11].affiliations[0].institution_ids | https://openalex.org/I1850255 |
| authorships[11].affiliations[0].raw_affiliation_string | Biozentrum, University of Basel, Basel, Switzerland |
| authorships[11].institutions[0].id | https://openalex.org/I1850255 |
| authorships[11].institutions[0].ror | https://ror.org/02s6k3f65 |
| authorships[11].institutions[0].type | education |
| authorships[11].institutions[0].lineage | https://openalex.org/I1850255 |
| authorships[11].institutions[0].country_code | CH |
| authorships[11].institutions[0].display_name | University of Basel |
| authorships[11].author_position | middle |
| authorships[11].raw_author_name | Michael N Hall |
| authorships[11].is_corresponding | False |
| authorships[11].raw_affiliation_strings | Biozentrum, University of Basel, Basel, Switzerland |
| authorships[12].author.id | https://openalex.org/A5053701690 |
| authorships[12].author.orcid | |
| authorships[12].author.display_name | Wilhelm Krek |
| authorships[12].countries | CH |
| authorships[12].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[12].affiliations[0].raw_affiliation_string | Institute for Molecular Health Sciences, ETH Zurich, Zurich, Switzerland |
| authorships[12].institutions[0].id | https://openalex.org/I35440088 |
| authorships[12].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[12].institutions[0].type | education |
| authorships[12].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[12].institutions[0].country_code | CH |
| authorships[12].institutions[0].display_name | ETH Zurich |
| authorships[12].author_position | middle |
| authorships[12].raw_author_name | Wilhelm Krek |
| authorships[12].is_corresponding | False |
| authorships[12].raw_affiliation_strings | Institute for Molecular Health Sciences, ETH Zurich, Zurich, Switzerland |
| authorships[13].author.id | https://openalex.org/A5031480514 |
| authorships[13].author.orcid | https://orcid.org/0000-0001-5902-9420 |
| authorships[13].author.display_name | Mitchell P. Levesque |
| authorships[13].countries | CH |
| authorships[13].affiliations[0].institution_ids | https://openalex.org/I4210100468 |
| authorships[13].affiliations[0].raw_affiliation_string | Department of Dermatology, University Hospital Zurich, Zurich, Switzerland |
| authorships[13].institutions[0].id | https://openalex.org/I4210100468 |
| authorships[13].institutions[0].ror | https://ror.org/01462r250 |
| authorships[13].institutions[0].type | healthcare |
| authorships[13].institutions[0].lineage | https://openalex.org/I4210100468 |
| authorships[13].institutions[0].country_code | CH |
| authorships[13].institutions[0].display_name | University Hospital of Zurich |
| authorships[13].author_position | middle |
| authorships[13].raw_author_name | Mitchell P Levesque |
| authorships[13].is_corresponding | False |
| authorships[13].raw_affiliation_strings | Department of Dermatology, University Hospital Zurich, Zurich, Switzerland |
| authorships[14].author.id | https://openalex.org/A5008095018 |
| authorships[14].author.orcid | https://orcid.org/0000-0002-4676-7931 |
| authorships[14].author.display_name | Markus G. Manz |
| authorships[14].countries | CH |
| authorships[14].affiliations[0].institution_ids | https://openalex.org/I4210100468 |
| authorships[14].affiliations[0].raw_affiliation_string | Division of Hematology, University Hospital Zurich, Zurich, Switzerland |
| authorships[14].institutions[0].id | https://openalex.org/I4210100468 |
| authorships[14].institutions[0].ror | https://ror.org/01462r250 |
| authorships[14].institutions[0].type | healthcare |
| authorships[14].institutions[0].lineage | https://openalex.org/I4210100468 |
| authorships[14].institutions[0].country_code | CH |
| authorships[14].institutions[0].display_name | University Hospital of Zurich |
| authorships[14].author_position | middle |
| authorships[14].raw_author_name | Markus G Manz |
| authorships[14].is_corresponding | False |
| authorships[14].raw_affiliation_strings | Division of Hematology, University Hospital Zurich, Zurich, Switzerland |
| authorships[15].author.id | https://openalex.org/A5076510325 |
| authorships[15].author.orcid | https://orcid.org/0000-0002-7986-2839 |
| authorships[15].author.display_name | Holger Moch |
| authorships[15].countries | CH |
| authorships[15].affiliations[0].institution_ids | https://openalex.org/I4210100468 |
| authorships[15].affiliations[0].raw_affiliation_string | Institute of Pathology and Molecular Pathology, University Hospital Zurich, Zurich, Switzerland |
| authorships[15].institutions[0].id | https://openalex.org/I4210100468 |
| authorships[15].institutions[0].ror | https://ror.org/01462r250 |
| authorships[15].institutions[0].type | healthcare |
| authorships[15].institutions[0].lineage | https://openalex.org/I4210100468 |
| authorships[15].institutions[0].country_code | CH |
| authorships[15].institutions[0].display_name | University Hospital of Zurich |
| authorships[15].author_position | middle |
| authorships[15].raw_author_name | Holger Moch |
| authorships[15].is_corresponding | False |
| authorships[15].raw_affiliation_strings | Institute of Pathology and Molecular Pathology, University Hospital Zurich, Zurich, Switzerland |
| authorships[16].author.id | https://openalex.org/A5075113890 |
| authorships[16].author.orcid | https://orcid.org/0000-0002-2210-9651 |
| authorships[16].author.display_name | Andreas Papassotiropoulos |
| authorships[16].countries | CH |
| authorships[16].affiliations[0].institution_ids | https://openalex.org/I1850255 |
| authorships[16].affiliations[0].raw_affiliation_string | Psychiatric University Clinics University of Basel, Basel, Switzerland |
| authorships[16].affiliations[1].raw_affiliation_string | Division of Molecular Neuroscience, Department of Psychology, Basel, Switzerland |
| authorships[16].affiliations[2].institution_ids | https://openalex.org/I1850255 |
| authorships[16].affiliations[2].raw_affiliation_string | Department Biozentrum, Life Sciences Training Facility, University of Basel, Basel, Switzerland |
| authorships[16].affiliations[3].raw_affiliation_string | Transfaculty Research Platform Molecular and Cognitive Neurosciences, Basel, Switzerland |
| authorships[16].institutions[0].id | https://openalex.org/I1850255 |
| authorships[16].institutions[0].ror | https://ror.org/02s6k3f65 |
| authorships[16].institutions[0].type | education |
| authorships[16].institutions[0].lineage | https://openalex.org/I1850255 |
| authorships[16].institutions[0].country_code | CH |
| authorships[16].institutions[0].display_name | University of Basel |
| authorships[16].author_position | middle |
| authorships[16].raw_author_name | Andreas Papassotiropoulos |
| authorships[16].is_corresponding | False |
| authorships[16].raw_affiliation_strings | Department Biozentrum, Life Sciences Training Facility, University of Basel, Basel, Switzerland, Division of Molecular Neuroscience, Department of Psychology, Basel, Switzerland, Psychiatric University Clinics University of Basel, Basel, Switzerland, Transfaculty Research Platform Molecular and Cognitive Neurosciences, Basel, Switzerland |
| authorships[17].author.id | https://openalex.org/A5085494082 |
| authorships[17].author.orcid | https://orcid.org/0000-0003-3163-3161 |
| authorships[17].author.display_name | Daniel J. Stekhoven |
| authorships[17].countries | CH |
| authorships[17].affiliations[0].raw_affiliation_string | NEXUS Personalized Health Technologies, Zurich, Switzerland |
| authorships[17].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[17].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[17].institutions[0].id | https://openalex.org/I12708293 |
| authorships[17].institutions[0].ror | https://ror.org/002n09z45 |
| authorships[17].institutions[0].type | nonprofit |
| authorships[17].institutions[0].lineage | https://openalex.org/I12708293 |
| authorships[17].institutions[0].country_code | CH |
| authorships[17].institutions[0].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[17].author_position | middle |
| authorships[17].raw_author_name | Daniel J Stekhoven |
| authorships[17].is_corresponding | False |
| authorships[17].raw_affiliation_strings | NEXUS Personalized Health Technologies, Zurich, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[18].author.id | https://openalex.org/A5029760404 |
| authorships[18].author.orcid | https://orcid.org/0000-0002-1017-3744 |
| authorships[18].author.display_name | Peter J. Wild |
| authorships[18].countries | CH |
| authorships[18].affiliations[0].institution_ids | https://openalex.org/I4210100468 |
| authorships[18].affiliations[0].raw_affiliation_string | Institute of Pathology and Molecular Pathology, University Hospital Zurich, Zurich, Switzerland |
| authorships[18].institutions[0].id | https://openalex.org/I4210100468 |
| authorships[18].institutions[0].ror | https://ror.org/01462r250 |
| authorships[18].institutions[0].type | healthcare |
| authorships[18].institutions[0].lineage | https://openalex.org/I4210100468 |
| authorships[18].institutions[0].country_code | CH |
| authorships[18].institutions[0].display_name | University Hospital of Zurich |
| authorships[18].author_position | middle |
| authorships[18].raw_author_name | Peter Wild |
| authorships[18].is_corresponding | False |
| authorships[18].raw_affiliation_strings | Institute of Pathology and Molecular Pathology, University Hospital Zurich, Zurich, Switzerland |
| authorships[19].author.id | https://openalex.org/A5112388698 |
| authorships[19].author.orcid | |
| authorships[19].author.display_name | Thomas Wüst |
| authorships[19].countries | CH |
| authorships[19].affiliations[0].institution_ids | https://openalex.org/I12708293 |
| authorships[19].affiliations[0].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[19].affiliations[1].institution_ids | https://openalex.org/I35440088 |
| authorships[19].affiliations[1].raw_affiliation_string | Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[19].institutions[0].id | https://openalex.org/I35440088 |
| authorships[19].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[19].institutions[0].type | education |
| authorships[19].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[19].institutions[0].country_code | CH |
| authorships[19].institutions[0].display_name | ETH Zurich |
| authorships[19].institutions[1].id | https://openalex.org/I12708293 |
| authorships[19].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[19].institutions[1].type | nonprofit |
| authorships[19].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[19].institutions[1].country_code | CH |
| authorships[19].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[19].author_position | middle |
| authorships[19].raw_author_name | Thomas Wüst |
| authorships[19].is_corresponding | False |
| authorships[19].raw_affiliation_strings | SIB Swiss Institute of Bioinformatics, Basel, Switzerland, Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[20].author.id | https://openalex.org/A5081462024 |
| authorships[20].author.orcid | |
| authorships[20].author.display_name | Bernd Rinn |
| authorships[20].countries | CH |
| authorships[20].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[20].affiliations[0].raw_affiliation_string | Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[20].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[20].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[20].institutions[0].id | https://openalex.org/I35440088 |
| authorships[20].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[20].institutions[0].type | education |
| authorships[20].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[20].institutions[0].country_code | CH |
| authorships[20].institutions[0].display_name | ETH Zurich |
| authorships[20].institutions[1].id | https://openalex.org/I12708293 |
| authorships[20].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[20].institutions[1].type | nonprofit |
| authorships[20].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[20].institutions[1].country_code | CH |
| authorships[20].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[20].author_position | middle |
| authorships[20].raw_author_name | Bernd Rinn |
| authorships[20].is_corresponding | False |
| authorships[20].raw_affiliation_strings | SIB Swiss Institute of Bioinformatics, Basel, Switzerland, Scientific IT Services, ETH Zurich, Basel, Switzerland |
| authorships[21].author.id | https://openalex.org/A5035497488 |
| authorships[21].author.orcid | https://orcid.org/0000-0002-0573-6119 |
| authorships[21].author.display_name | Niko Beerenwinkel |
| authorships[21].countries | CH |
| authorships[21].affiliations[0].institution_ids | https://openalex.org/I35440088 |
| authorships[21].affiliations[0].raw_affiliation_string | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland |
| authorships[21].affiliations[1].institution_ids | https://openalex.org/I12708293 |
| authorships[21].affiliations[1].raw_affiliation_string | SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| authorships[21].institutions[0].id | https://openalex.org/I35440088 |
| authorships[21].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[21].institutions[0].type | education |
| authorships[21].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[21].institutions[0].country_code | CH |
| authorships[21].institutions[0].display_name | ETH Zurich |
| authorships[21].institutions[1].id | https://openalex.org/I12708293 |
| authorships[21].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[21].institutions[1].type | nonprofit |
| authorships[21].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[21].institutions[1].country_code | CH |
| authorships[21].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[21].author_position | last |
| authorships[21].raw_author_name | Niko Beerenwinkel |
| authorships[21].is_corresponding | True |
| authorships[21].raw_affiliation_strings | Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdf |
| open_access.oa_status | hybrid |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis |
| has_fulltext | False |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10015 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9990000128746033 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1312 |
| primary_topic.subfield.display_name | Molecular Biology |
| primary_topic.display_name | Genomics and Phylogenetic Studies |
| related_works | https://openalex.org/W4361301861, https://openalex.org/W2022885175, https://openalex.org/W1622500880, https://openalex.org/W4311018599, https://openalex.org/W1991655545, https://openalex.org/W2610790664, https://openalex.org/W4318372907, https://openalex.org/W2009451580, https://openalex.org/W3017376279, https://openalex.org/W2471493882 |
| cited_by_count | 33 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 2 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 1 |
| counts_by_year[2].year | 2023 |
| counts_by_year[2].cited_by_count | 7 |
| counts_by_year[3].year | 2022 |
| counts_by_year[3].cited_by_count | 3 |
| counts_by_year[4].year | 2021 |
| counts_by_year[4].cited_by_count | 6 |
| counts_by_year[5].year | 2020 |
| counts_by_year[5].cited_by_count | 4 |
| counts_by_year[6].year | 2019 |
| counts_by_year[6].cited_by_count | 5 |
| counts_by_year[7].year | 2018 |
| counts_by_year[7].cited_by_count | 4 |
| counts_by_year[8].year | 2017 |
| counts_by_year[8].cited_by_count | 1 |
| locations_count | 8 |
| best_oa_location.id | doi:10.1093/bioinformatics/btx540 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S52395412 |
| best_oa_location.source.issn | 1367-4803, 1367-4811 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | False |
| best_oa_location.source.issn_l | 1367-4803 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | Bioinformatics |
| best_oa_location.source.host_organization | https://openalex.org/P4310311648 |
| best_oa_location.source.host_organization_name | Oxford University Press |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| best_oa_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| best_oa_location.license | cc-by-nc |
| best_oa_location.pdf_url | https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by-nc |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Bioinformatics |
| best_oa_location.landing_page_url | https://doi.org/10.1093/bioinformatics/btx540 |
| primary_location.id | doi:10.1093/bioinformatics/btx540 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S52395412 |
| primary_location.source.issn | 1367-4803, 1367-4811 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | False |
| primary_location.source.issn_l | 1367-4803 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | Bioinformatics |
| primary_location.source.host_organization | https://openalex.org/P4310311648 |
| primary_location.source.host_organization_name | Oxford University Press |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| primary_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| primary_location.license | cc-by-nc |
| primary_location.pdf_url | https://academic.oup.com/bioinformatics/article-pdf/34/1/107/25113619/btx540.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by-nc |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Bioinformatics |
| primary_location.landing_page_url | https://doi.org/10.1093/bioinformatics/btx540 |
| publication_date | 2017-08-26 |
| publication_year | 2017 |
| referenced_works | https://openalex.org/W2192272998, https://openalex.org/W2098746581, https://openalex.org/W2208730418, https://openalex.org/W2567652848, https://openalex.org/W2110417468, https://openalex.org/W2111281047 |
| referenced_works_count | 6 |
| abstract_inverted_index.a | 21, 61 |
| abstract_inverted_index.We | 58 |
| abstract_inverted_index.an | 6 |
| abstract_inverted_index.by | 32, 88 |
| abstract_inverted_index.in | 9 |
| abstract_inverted_index.is | 4, 29, 44 |
| abstract_inverted_index.of | 14, 25, 39, 70, 84 |
| abstract_inverted_index.on | 20 |
| abstract_inverted_index.to | 72, 98 |
| abstract_inverted_index.NGS | 100 |
| abstract_inverted_index.and | 11, 53, 64, 76, 95, 103 |
| abstract_inverted_index.are | 17, 55 |
| abstract_inverted_index.but | 36 |
| abstract_inverted_index.for | 49, 67 |
| abstract_inverted_index.now | 5 |
| abstract_inverted_index.the | 26, 37, 68, 82 |
| abstract_inverted_index.data | 16, 28, 86 |
| abstract_inverted_index.easy | 96 |
| abstract_inverted_index.from | 41 |
| abstract_inverted_index.being | 18 |
| abstract_inverted_index.data. | 79 |
| abstract_inverted_index.often | 45 |
| abstract_inverted_index.other | 99 |
| abstract_inverted_index.basis. | 23 |
| abstract_inverted_index.design | 69 |
| abstract_inverted_index.method | 8 |
| abstract_inverted_index.small. | 46 |
| abstract_inverted_index.General | 47 |
| abstract_inverted_index.Results | 57 |
| abstract_inverted_index.amounts | 13 |
| abstract_inverted_index.analyze | 73 |
| abstract_inverted_index.genomic | 85 |
| abstract_inverted_index.massive | 12 |
| abstract_inverted_index.quality | 50, 90 |
| abstract_inverted_index.regular | 22 |
| abstract_inverted_index.results | 40 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Analysis | 24 |
| abstract_inverted_index.NGS-pipe | 80 |
| abstract_inverted_index.analysis | 87 |
| abstract_inverted_index.control, | 51, 91 |
| abstract_inverted_index.in-house | 34 |
| abstract_inverted_index.missing. | 56 |
| abstract_inverted_index.NGS-pipe, | 60 |
| abstract_inverted_index.agreement | 38 |
| abstract_inverted_index.developed | 59 |
| abstract_inverted_index.different | 42 |
| abstract_inverted_index.flexible, | 62 |
| abstract_inverted_index.framework | 66 |
| abstract_inverted_index.generated | 19 |
| abstract_inverted_index.genomics, | 10 |
| abstract_inverted_index.performed | 31 |
| abstract_inverted_index.pipelines | 71 |
| abstract_inverted_index.standards | 48 |
| abstract_inverted_index.typically | 30 |
| abstract_inverted_index.Motivation | 1 |
| abstract_inverted_index.adaptation | 97 |
| abstract_inverted_index.facilities | 43 |
| abstract_inverted_index.sequencing | 3, 15, 27, 78 |
| abstract_inverted_index.solutions, | 35 |
| abstract_inverted_index.supporting | 89 |
| abstract_inverted_index.easy-to-use | 65 |
| abstract_inverted_index.established | 7 |
| abstract_inverted_index.facilitates | 81 |
| abstract_inverted_index.transparent | 63 |
| abstract_inverted_index.Availability | 102 |
| abstract_inverted_index.experiments. | 101 |
| abstract_inverted_index.lab-specific | 33 |
| abstract_inverted_index.whole-exome, | 74 |
| abstract_inverted_index.whole-genome | 75 |
| abstract_inverted_index.documentation | 54 |
| abstract_inverted_index.harmonization | 83 |
| abstract_inverted_index.transcriptome | 77 |
| abstract_inverted_index.documentation, | 92 |
| abstract_inverted_index.implementation | 104 |
| abstract_inverted_index.Next-generation | 2 |
| abstract_inverted_index.parallelization | 94 |
| abstract_inverted_index.reproducibility | 52 |
| abstract_inverted_index.reproducibility, | 93 |
| abstract_inverted_index.https://github.com/cbg-ethz/NGS-pipe | 105 |
| cited_by_percentile_year.max | 99 |
| cited_by_percentile_year.min | 90 |
| corresponding_author_ids | https://openalex.org/A5035497488 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 22 |
| corresponding_institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| citation_normalized_percentile.value | 0.8265854 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |