NNPDF/nnpdf: Version 4.0.4 Article Swipe

This is an incremental bugfix release. The main highlights are: Fix a bug in integrated luminosity plots #1442. Code for ancillary NNPDF 4.0 analysis (such as Hessian conversion #1344, Nf=4 re-evolution #1422, or alpha_s errors bundling #1340). User facing documentation, including for reproducibility of 4.0 the analysis (#1378) Additional changes include: A bug in the evolution basis definition #1445, of no consequence to existing analyses was fixed (thanks to @msyan!). Enhancements to hyperoprimization allowing it to work on estimators depending on a full fit (#1316). Some work on moving features implemented in C++ to python (e.g. #1268). Tweaks and enhancements to various plotting functions, as well as new spider diagrams (#1194). Automation using Github Actions, to for example produce release Doceker images (#1390). The full list of changes is included below. What's Changed New Features Improve varflavors script (#1422) @Zaharid Compute 1D luminosities with a rapidity cut (#1439) @enocera Add fit-based targets to hyperparameter optimization (#1316) @scarlehoff Speed up convolution (#1435) @scarlehoff Use internal cuts in tests with predictions (#1429) @scarlehoff Add integrability datasets for valence pdfs (#1412) @RoyStegeman adding --theory_id flag to evolven3fit (#1346) @scarrazza Add modified_tanh activation function (#1411) @RoyStegeman Add toggle to remove 68% legend labels (#1406) @Zaharid Improving reading and recreating fit pseudodata (#1328) @siranipour Adding spider plot for dataspecs groups (#1398) @siranipour Bump reportengine version (#1399) @Zaharid Saving new python pseudodata during fit (#1333) @siranipour Added separate theory for iterated K-factors (#1396) @enocera Hyperoptimization: take trials from a previous run (#1314) @scarlehoff Added scalar functions to plot d/u and dbar/ubar ratios (#1365) @enocera Adding action to bundle PDFs (#1340) @siranipour MC2Hessian in vp (#1348) @RoyStegeman General theory covmat (#991) @RosalynLP Create a hyperscan resource (#1313) @scarlehoff remove formatting of pdf scale in title - use default python format (#1327) @wilsonmr Making n3fit use python covmats (#1285) @siranipour impose_sumrules default setting (#1322) @RoyStegeman Modify vp-comparefits interface (#1312) @scarlehoff update matplotlib hatch style (#1317) @RoyStegeman At least 1d central values for t0 predictions (#1305) @siranipour Cleaner CommonData repr (#1310) @siranipour Plot higher mx data by default (#1308) @Zaharid Making n3fit use python pseudodata (#1268) @siranipour Allow the n3fit-vp interface to make use of more than 1 members (#1251) @scarlehoff Generate replicas when fitting models in parallel (#1261) @scarlehoff Create spider/radar diagram for comparing chi2s between fits (#1194) @RosalynLP Bug fixes Fix bug in the definition of the 1D luminosity. (#1443) @enocera fixing T24 and V24 definition in vp (#1445) @tgiani Fix for smpdf (#1437) @scarlehoff Fixing training mask tables (#1423) @siranipour Collecting over cuts context for pseudodata (#1418) @siranipour Fix to <code>check_cuts_considered</code> (#1419) @scarlehoff Collect over groups to arrange groups_chi2 table (#1352) @siranipour Fix some problems in spider plots (#1389) @Zaharid Fix commodata loader bug (#1415) @RoyStegeman remove space at beggining of line in pdfas header (#1404) @RoyStegeman Fixed typo in PDF4LHC21 basis (#1393) @enocera fix default value in postfit help (#1391) @RoyStegeman Fix hyphotesis timeout (#1383) @scarlehoff Correcting kinematics override for DY datasets (#1357) @siranipour change header replica0 (#1342) @RoyStegeman Fix regressions by specifying dtype (#1336) @siranipour Recover <code>overfit</code> option for partitions (#1330) @scarlehoff Fixing memory leaks in buildmaster (#1300) @enocera Fixing buildmaster leaks round 2 (#1318) @scarrazza Correcting syntax in PLOTTING_POSDYU.yaml (#1307) @RosalynLP Fix potential bug in <code>read_fit_pseudodata</code> (#1249) @RosalynLP Make fitting theory covmat with indices aligned with experiment covmat (#1232) @RosalynLP Fix vp-deltachi2 by changing experiments to datasets inputs (#1292) @scarlehoff Documentation Update resources for tests, examples and documentation to be NNPDF4.0 based (#1440) @scarlehoff Add warning on compatibility of Hessian sets (#1441) @Zaharid Fix <code>make_replica</code> example (#1425) @siranipour Fixing pseudodata tutorial (#1427) @siranipour Update git tutorial (#1431) @scarlehoff Add docs on how to do a future test (#1408) @scarlehoff Restructuring data kws docs (#1382) @siranipour update runcard names to agree with paper (#1402) @RoyStegeman Add compression tools to docs (#1395) @scarlehoff Temporarily remove nf=4 comment (#1401) @Zaharid Add sysroot to installation instruction (#1400) @Zaharid Refine wording on coding rules (#1387) @Zaharid Remove nnfit references (#1394) @scarlehoff Add documentation on compatibility policy (#1385) @Zaharid Write a publicly facing README (#1374) @Zaharid how to reproduce nnpdf40 fit - docs (#1378) @RoyStegeman Rephrasing docs frontpage /fixing typos (#1343) @RosalynLP Add dataset specification to runcard guide (#1379) @scarlehoff Create LICENSE (#1375) @scarrazza Docs code structure (#1368) @RoyStegeman restructured documentation (#1303) @mariaubiali Update runcards with latest choice of baseline data set (#1320) @enocera Add NNPDF4.0 conda environment (#1255) @Zaharid Remove authors from docs (#1304) @voisey Correct typos (#1301) @RosalynLP Removed reference to no longer existing data_layout file in doc (#1297) @enocera update LO runcards (#1296) @RoyStegeman Workflow adding minimum setup for release drafter (#1447) @scarrazza updating tests for github actions (#1397) @scarrazza GitHub Packages for nnpdf (#1390) @scarrazza disable self-hosted runner for fit-bot (#1369) @scarrazza Add testing github action (#1363) @scarlehoff Refactoring Revert correlated shift functionality (#1388) @Zaharid Delete validphys 1 (#1361) @Zaharid Remove unused class (#1350) @Zaharid Removing unused imports (#1338) @siranipour Delete old executables (#1283) @Zaharid <strong>Full Changelog</strong>: https://github.com/NNPDF/nnpdf/compare/4.0.3...4.0.4