Occurrence cubes: a new paradigm for aggregating species occurrence data Article Swipe
Damiano Oldoni
,
Quentin Groom
,
Tim Adriaens
,
Amy J.S. Davis
,
Lien Reyserhove
,
Diederik Strubbe
,
Sonia Vanderhoeven
,
Peter Desmet
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.1101/2020.03.23.983601
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.1101/2020.03.23.983601
In this paper we describe a method of aggregating species occurrence data into what we coined “occurrence cubes”. The aggregated data can be perceived as a cube with three dimensions - taxonomic, temporal and geographic - and takes into account the spatial uncertainty of each occurrence. The aggregation level of each of the three dimensions can be adapted to the scope. Built on Open Science principles, the method is easily automated and reproducible, and can be used for species trend indicators, maps and distribution models. We are using the method to aggregate species occurrence data for Europe per taxon, year and 1km 2 European reference grid, to feed indicators and risk mapping/modelling for the Tracking Invasive Alien Species (TrIAS) project.
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Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2020.03.23.983601
- https://www.biorxiv.org/content/biorxiv/early/2020/03/25/2020.03.23.983601.full.pdf
- OA Status
- green
- Cited By
- 4
- References
- 11
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W3013473027
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W3013473027Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2020.03.23.983601Digital Object Identifier
- Title
-
Occurrence cubes: a new paradigm for aggregating species occurrence dataWork title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
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2020Year of publication
- Publication date
-
2020-03-25Full publication date if available
- Authors
-
Damiano Oldoni, Quentin Groom, Tim Adriaens, Amy J.S. Davis, Lien Reyserhove, Diederik Strubbe, Sonia Vanderhoeven, Peter DesmetList of authors in order
- Landing page
-
https://doi.org/10.1101/2020.03.23.983601Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2020/03/25/2020.03.23.983601.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2020/03/25/2020.03.23.983601.full.pdfDirect OA link when available
- Concepts
-
Aggregate (composite), Grid, Computer science, Scope (computer science), Taxon, Species distribution, Data cube, Cartography, Data mining, Geography, Ecology, Habitat, Biology, Composite material, Programming language, Materials science, GeodesyTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
4Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 2, 2023: 1, 2021: 1Per-year citation counts (last 5 years)
- References (count)
-
11Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
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