OME-Zarr: a cloud-optimized bioimaging file format with international community support Article Swipe
YOU?
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· 2023
· Open Access
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· DOI: https://doi.org/10.1101/2023.02.17.528834
A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the Open Microscopy Environment (OME), individuals and institutes across diverse modalities facing these problems have designed a format specification process (OME-NGFF) to address these needs. This paper brings together a wide range of those community members to describe the cloud-optimized format itself – OME-Zarr – along with tools and data resources available today to increase FAIR access and remove barriers in the scientific process. The current momentum offers an opportunity to unify a key component of the bioimaging domain — the file format that underlies so many personal, institutional, and global data management and analysis tasks.
Related Topics
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/2023.02.17.528834
- https://www.biorxiv.org/content/biorxiv/early/2023/05/07/2023.02.17.528834.full.pdf
- OA Status
- green
- Cited By
- 21
- References
- 56
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4321444368
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4321444368Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1101/2023.02.17.528834Digital Object Identifier
- Title
-
OME-Zarr: a cloud-optimized bioimaging file format with international community supportWork title
- Type
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preprintOpenAlex work type
- Language
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enPrimary language
- Publication year
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2023Year of publication
- Publication date
-
2023-02-21Full publication date if available
- Authors
-
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Eva Maxfield Brown, Jean‐Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E. Diel, David Gault, Satrajit Ghosh, Ilan Gold, Yaroslav O. Halchenko, Matthew Hartley, Dave Horsfall, Mark S. Keller, Mark Kittisopikul, Gabor Kovacs, A. Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William J. Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J. Schaub, Hythem Sidky, Ahmet Can Solak, David R. Stirling, Jonathan Striebel, Christian Tischer, Daniel Toloudis, Isaac Virshup, Petr Walczysko, Alan M. Watson, Erin Weisbart, Frances Wong, Kevin A. Yamauchi, Omer Ali Bayraktar, Beth A. Cimini, Nils Gehlenborg, Muzlifah Haniffa, Nathan Hotaling, Shuichi Onami, Löıc A. Royer, Stephan Saalfeld, Oliver Stegle, Fabian J. Theis, Jason R. SwedlowList of authors in order
- Landing page
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https://doi.org/10.1101/2023.02.17.528834Publisher landing page
- PDF URL
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https://www.biorxiv.org/content/biorxiv/early/2023/05/07/2023.02.17.528834.full.pdfDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
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greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2023/05/07/2023.02.17.528834.full.pdfDirect OA link when available
- Concepts
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Cloud computing, Computer science, Scalability, Process (computing), File format, Domain (mathematical analysis), Component (thermodynamics), Key (lock), Data science, Modalities, World Wide Web, Software engineering, Database, Operating system, Mathematical analysis, Thermodynamics, Sociology, Social science, Mathematics, PhysicsTop concepts (fields/topics) attached by OpenAlex
- Cited by
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21Total citation count in OpenAlex
- Citations by year (recent)
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2025: 6, 2024: 7, 2023: 8Per-year citation counts (last 5 years)
- References (count)
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56Number of works referenced by this work
- Related works (count)
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10Other works algorithmically related by OpenAlex
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