openBIS ELN-LIMS: an open-source database for academic laboratories Article Swipe
YOU?
·
· 2015
· Open Access
·
· DOI: https://doi.org/10.1093/bioinformatics/btv606
Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. Availability and implementation: The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. Contact: [email protected] or [email protected]
Related Topics
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1093/bioinformatics/btv606
- https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdf
- OA Status
- hybrid
- Cited By
- 73
- References
- 5
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2174655541
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2174655541Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1093/bioinformatics/btv606Digital Object Identifier
- Title
-
openBIS ELN-LIMS: an open-source database for academic laboratoriesWork title
- Type
-
articleOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2015Year of publication
- Publication date
-
2015-10-27Full publication date if available
- Authors
-
Caterina Barillari, Diana S. M. Ottoz, Juan Mariano Fuentes-Serna, Chandrasekhar Ramakrishnan, Bernd Rinn, Fabian RudolfList of authors in order
- Landing page
-
https://doi.org/10.1093/bioinformatics/btv606Publisher landing page
- PDF URL
-
https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
hybridOpen access status per OpenAlex
- OA URL
-
https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdfDirect OA link when available
- Concepts
-
Computer science, Open source, Interface (matter), Software, Database, Operating system, World Wide Web, Software engineering, Bubble, Maximum bubble pressure methodTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
73Total citation count in OpenAlex
- Citations by year (recent)
-
2025: 13, 2024: 9, 2023: 13, 2022: 16, 2021: 4Per-year citation counts (last 5 years)
- References (count)
-
5Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2174655541 |
|---|---|
| doi | https://doi.org/10.1093/bioinformatics/btv606 |
| ids.doi | https://doi.org/10.1093/bioinformatics/btv606 |
| ids.mag | 2174655541 |
| ids.pmid | https://pubmed.ncbi.nlm.nih.gov/26508761 |
| ids.openalex | https://openalex.org/W2174655541 |
| fwci | 6.60155146 |
| mesh[0].qualifier_ui | |
| mesh[0].descriptor_ui | D001690 |
| mesh[0].is_major_topic | True |
| mesh[0].qualifier_name | |
| mesh[0].descriptor_name | Biological Science Disciplines |
| mesh[1].qualifier_ui | |
| mesh[1].descriptor_ui | D003199 |
| mesh[1].is_major_topic | False |
| mesh[1].qualifier_name | |
| mesh[1].descriptor_name | Computer Systems |
| mesh[2].qualifier_ui | |
| mesh[2].descriptor_ui | D016208 |
| mesh[2].is_major_topic | True |
| mesh[2].qualifier_name | |
| mesh[2].descriptor_name | Databases, Factual |
| mesh[3].qualifier_ui | |
| mesh[3].descriptor_ui | D019451 |
| mesh[3].is_major_topic | True |
| mesh[3].qualifier_name | |
| mesh[3].descriptor_name | Information Management |
| mesh[4].qualifier_ui | |
| mesh[4].descriptor_ui | D007256 |
| mesh[4].is_major_topic | False |
| mesh[4].qualifier_name | |
| mesh[4].descriptor_name | Information Systems |
| mesh[5].qualifier_ui | |
| mesh[5].descriptor_ui | D007753 |
| mesh[5].is_major_topic | True |
| mesh[5].qualifier_name | |
| mesh[5].descriptor_name | Laboratories |
| mesh[6].qualifier_ui | |
| mesh[6].descriptor_ui | D012984 |
| mesh[6].is_major_topic | False |
| mesh[6].qualifier_name | |
| mesh[6].descriptor_name | Software |
| mesh[7].qualifier_ui | |
| mesh[7].descriptor_ui | D014584 |
| mesh[7].is_major_topic | False |
| mesh[7].qualifier_name | |
| mesh[7].descriptor_name | User-Computer Interface |
| mesh[8].qualifier_ui | |
| mesh[8].descriptor_ui | D001690 |
| mesh[8].is_major_topic | True |
| mesh[8].qualifier_name | |
| mesh[8].descriptor_name | Biological Science Disciplines |
| mesh[9].qualifier_ui | |
| mesh[9].descriptor_ui | D003199 |
| mesh[9].is_major_topic | False |
| mesh[9].qualifier_name | |
| mesh[9].descriptor_name | Computer Systems |
| mesh[10].qualifier_ui | |
| mesh[10].descriptor_ui | D016208 |
| mesh[10].is_major_topic | True |
| mesh[10].qualifier_name | |
| mesh[10].descriptor_name | Databases, Factual |
| mesh[11].qualifier_ui | |
| mesh[11].descriptor_ui | D019451 |
| mesh[11].is_major_topic | True |
| mesh[11].qualifier_name | |
| mesh[11].descriptor_name | Information Management |
| mesh[12].qualifier_ui | |
| mesh[12].descriptor_ui | D007256 |
| mesh[12].is_major_topic | False |
| mesh[12].qualifier_name | |
| mesh[12].descriptor_name | Information Systems |
| mesh[13].qualifier_ui | |
| mesh[13].descriptor_ui | D007753 |
| mesh[13].is_major_topic | True |
| mesh[13].qualifier_name | |
| mesh[13].descriptor_name | Laboratories |
| mesh[14].qualifier_ui | |
| mesh[14].descriptor_ui | D012984 |
| mesh[14].is_major_topic | False |
| mesh[14].qualifier_name | |
| mesh[14].descriptor_name | Software |
| mesh[15].qualifier_ui | |
| mesh[15].descriptor_ui | D014584 |
| mesh[15].is_major_topic | False |
| mesh[15].qualifier_name | |
| mesh[15].descriptor_name | User-Computer Interface |
| type | article |
| title | openBIS ELN-LIMS: an open-source database for academic laboratories |
| biblio.issue | 4 |
| biblio.volume | 32 |
| biblio.last_page | 640 |
| biblio.first_page | 638 |
| topics[0].id | https://openalex.org/T11986 |
| topics[0].field.id | https://openalex.org/fields/18 |
| topics[0].field.display_name | Decision Sciences |
| topics[0].score | 0.9991999864578247 |
| topics[0].domain.id | https://openalex.org/domains/2 |
| topics[0].domain.display_name | Social Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1802 |
| topics[0].subfield.display_name | Information Systems and Management |
| topics[0].display_name | Scientific Computing and Data Management |
| topics[1].id | https://openalex.org/T11937 |
| topics[1].field.id | https://openalex.org/fields/17 |
| topics[1].field.display_name | Computer Science |
| topics[1].score | 0.9940000176429749 |
| topics[1].domain.id | https://openalex.org/domains/3 |
| topics[1].domain.display_name | Physical Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/1710 |
| topics[1].subfield.display_name | Information Systems |
| topics[1].display_name | Research Data Management Practices |
| topics[2].id | https://openalex.org/T10015 |
| topics[2].field.id | https://openalex.org/fields/13 |
| topics[2].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[2].score | 0.9901000261306763 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/1312 |
| topics[2].subfield.display_name | Molecular Biology |
| topics[2].display_name | Genomics and Phylogenetic Studies |
| is_xpac | False |
| apc_list.value | 3618 |
| apc_list.currency | USD |
| apc_list.value_usd | 3618 |
| apc_paid.value | 3618 |
| apc_paid.currency | USD |
| apc_paid.value_usd | 3618 |
| concepts[0].id | https://openalex.org/C41008148 |
| concepts[0].level | 0 |
| concepts[0].score | 0.6169344782829285 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[0].display_name | Computer science |
| concepts[1].id | https://openalex.org/C3018397939 |
| concepts[1].level | 3 |
| concepts[1].score | 0.5604636073112488 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q3644502 |
| concepts[1].display_name | Open source |
| concepts[2].id | https://openalex.org/C113843644 |
| concepts[2].level | 4 |
| concepts[2].score | 0.5447528958320618 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q901882 |
| concepts[2].display_name | Interface (matter) |
| concepts[3].id | https://openalex.org/C2777904410 |
| concepts[3].level | 2 |
| concepts[3].score | 0.534536600112915 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q7397 |
| concepts[3].display_name | Software |
| concepts[4].id | https://openalex.org/C77088390 |
| concepts[4].level | 1 |
| concepts[4].score | 0.481415718793869 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q8513 |
| concepts[4].display_name | Database |
| concepts[5].id | https://openalex.org/C111919701 |
| concepts[5].level | 1 |
| concepts[5].score | 0.45864468812942505 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q9135 |
| concepts[5].display_name | Operating system |
| concepts[6].id | https://openalex.org/C136764020 |
| concepts[6].level | 1 |
| concepts[6].score | 0.4386109411716461 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q466 |
| concepts[6].display_name | World Wide Web |
| concepts[7].id | https://openalex.org/C115903868 |
| concepts[7].level | 1 |
| concepts[7].score | 0.40021082758903503 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q80993 |
| concepts[7].display_name | Software engineering |
| concepts[8].id | https://openalex.org/C157915830 |
| concepts[8].level | 2 |
| concepts[8].score | 0.0 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q2928001 |
| concepts[8].display_name | Bubble |
| concepts[9].id | https://openalex.org/C129307140 |
| concepts[9].level | 3 |
| concepts[9].score | 0.0 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q6795880 |
| concepts[9].display_name | Maximum bubble pressure method |
| keywords[0].id | https://openalex.org/keywords/computer-science |
| keywords[0].score | 0.6169344782829285 |
| keywords[0].display_name | Computer science |
| keywords[1].id | https://openalex.org/keywords/open-source |
| keywords[1].score | 0.5604636073112488 |
| keywords[1].display_name | Open source |
| keywords[2].id | https://openalex.org/keywords/interface |
| keywords[2].score | 0.5447528958320618 |
| keywords[2].display_name | Interface (matter) |
| keywords[3].id | https://openalex.org/keywords/software |
| keywords[3].score | 0.534536600112915 |
| keywords[3].display_name | Software |
| keywords[4].id | https://openalex.org/keywords/database |
| keywords[4].score | 0.481415718793869 |
| keywords[4].display_name | Database |
| keywords[5].id | https://openalex.org/keywords/operating-system |
| keywords[5].score | 0.45864468812942505 |
| keywords[5].display_name | Operating system |
| keywords[6].id | https://openalex.org/keywords/world-wide-web |
| keywords[6].score | 0.4386109411716461 |
| keywords[6].display_name | World Wide Web |
| keywords[7].id | https://openalex.org/keywords/software-engineering |
| keywords[7].score | 0.40021082758903503 |
| keywords[7].display_name | Software engineering |
| language | en |
| locations[0].id | doi:10.1093/bioinformatics/btv606 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S52395412 |
| locations[0].source.issn | 1367-4803, 1367-4811 |
| locations[0].source.type | journal |
| locations[0].source.is_oa | False |
| locations[0].source.issn_l | 1367-4803 |
| locations[0].source.is_core | True |
| locations[0].source.is_in_doaj | True |
| locations[0].source.display_name | Bioinformatics |
| locations[0].source.host_organization | https://openalex.org/P4310311648 |
| locations[0].source.host_organization_name | Oxford University Press |
| locations[0].source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| locations[0].source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| locations[0].license | cc-by-nc |
| locations[0].pdf_url | https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdf |
| locations[0].version | publishedVersion |
| locations[0].raw_type | journal-article |
| locations[0].license_id | https://openalex.org/licenses/cc-by-nc |
| locations[0].is_accepted | True |
| locations[0].is_published | True |
| locations[0].raw_source_name | Bioinformatics |
| locations[0].landing_page_url | https://doi.org/10.1093/bioinformatics/btv606 |
| locations[1].id | pmid:26508761 |
| locations[1].is_oa | False |
| locations[1].source.id | https://openalex.org/S4306525036 |
| locations[1].source.issn | |
| locations[1].source.type | repository |
| locations[1].source.is_oa | False |
| locations[1].source.issn_l | |
| locations[1].source.is_core | False |
| locations[1].source.is_in_doaj | False |
| locations[1].source.display_name | PubMed |
| locations[1].source.host_organization | https://openalex.org/I1299303238 |
| locations[1].source.host_organization_name | National Institutes of Health |
| locations[1].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[1].license | |
| locations[1].pdf_url | |
| locations[1].version | publishedVersion |
| locations[1].raw_type | |
| locations[1].license_id | |
| locations[1].is_accepted | True |
| locations[1].is_published | True |
| locations[1].raw_source_name | Bioinformatics (Oxford, England) |
| locations[1].landing_page_url | https://pubmed.ncbi.nlm.nih.gov/26508761 |
| locations[2].id | pmh:oai:www.research-collection.ethz.ch:20.500.11850/109095 |
| locations[2].is_oa | True |
| locations[2].source.id | https://openalex.org/S4306402302 |
| locations[2].source.issn | |
| locations[2].source.type | repository |
| locations[2].source.is_oa | False |
| locations[2].source.issn_l | |
| locations[2].source.is_core | False |
| locations[2].source.is_in_doaj | False |
| locations[2].source.display_name | Repository for Publications and Research Data (ETH Zurich) |
| locations[2].source.host_organization | https://openalex.org/I35440088 |
| locations[2].source.host_organization_name | ETH Zurich |
| locations[2].source.host_organization_lineage | https://openalex.org/I35440088 |
| locations[2].license | other-oa |
| locations[2].pdf_url | http://hdl.handle.net/20.500.11850/109095 |
| locations[2].version | submittedVersion |
| locations[2].raw_type | info:eu-repo/semantics/publishedVersion |
| locations[2].license_id | https://openalex.org/licenses/other-oa |
| locations[2].is_accepted | False |
| locations[2].is_published | False |
| locations[2].raw_source_name | Bioinformatics, 32 (4) |
| locations[2].landing_page_url | http://hdl.handle.net/20.500.11850/109095 |
| locations[3].id | pmh:oai:open-archive.highwire.org:bioinfo:32/4/638 |
| locations[3].is_oa | False |
| locations[3].source | |
| locations[3].license | |
| locations[3].pdf_url | |
| locations[3].version | submittedVersion |
| locations[3].raw_type | TEXT |
| locations[3].license_id | |
| locations[3].is_accepted | False |
| locations[3].is_published | False |
| locations[3].raw_source_name | |
| locations[3].landing_page_url | http://bioinformatics.oxfordjournals.org/cgi/content/short/32/4/638 |
| locations[4].id | pmh:oai:pubmedcentral.nih.gov:4743625 |
| locations[4].is_oa | True |
| locations[4].source.id | https://openalex.org/S2764455111 |
| locations[4].source.issn | |
| locations[4].source.type | repository |
| locations[4].source.is_oa | False |
| locations[4].source.issn_l | |
| locations[4].source.is_core | False |
| locations[4].source.is_in_doaj | False |
| locations[4].source.display_name | PubMed Central |
| locations[4].source.host_organization | https://openalex.org/I1299303238 |
| locations[4].source.host_organization_name | National Institutes of Health |
| locations[4].source.host_organization_lineage | https://openalex.org/I1299303238 |
| locations[4].license | |
| locations[4].pdf_url | |
| locations[4].version | submittedVersion |
| locations[4].raw_type | Text |
| locations[4].license_id | |
| locations[4].is_accepted | False |
| locations[4].is_published | False |
| locations[4].raw_source_name | |
| locations[4].landing_page_url | http://doi.org/10.1093/bioinformatics/btv606 |
| locations[5].id | doi:10.3929/ethz-b-000109095 |
| locations[5].is_oa | True |
| locations[5].source.id | https://openalex.org/S7407051236 |
| locations[5].source.type | repository |
| locations[5].source.is_oa | False |
| locations[5].source.issn_l | |
| locations[5].source.is_core | False |
| locations[5].source.is_in_doaj | False |
| locations[5].source.display_name | ETH Zürich Research Collection |
| locations[5].source.host_organization | |
| locations[5].source.host_organization_name | |
| locations[5].license | |
| locations[5].pdf_url | |
| locations[5].version | |
| locations[5].raw_type | article-journal |
| locations[5].license_id | |
| locations[5].is_accepted | False |
| locations[5].is_published | |
| locations[5].raw_source_name | |
| locations[5].landing_page_url | https://doi.org/10.3929/ethz-b-000109095 |
| indexed_in | crossref, datacite, doaj, pubmed |
| authorships[0].author.id | https://openalex.org/A5060271697 |
| authorships[0].author.orcid | https://orcid.org/0000-0001-7590-8767 |
| authorships[0].author.display_name | Caterina Barillari |
| authorships[0].countries | CH |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[0].affiliations[0].raw_affiliation_string | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[0].institutions[0].id | https://openalex.org/I35440088 |
| authorships[0].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[0].institutions[0].type | education |
| authorships[0].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[0].institutions[0].country_code | CH |
| authorships[0].institutions[0].display_name | ETH Zurich |
| authorships[0].institutions[1].id | https://openalex.org/I12708293 |
| authorships[0].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[0].institutions[1].type | nonprofit |
| authorships[0].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[0].institutions[1].country_code | CH |
| authorships[0].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Caterina Barillari |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[1].author.id | https://openalex.org/A5020816383 |
| authorships[1].author.orcid | https://orcid.org/0000-0003-0405-0323 |
| authorships[1].author.display_name | Diana S. M. Ottoz |
| authorships[1].countries | CH |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[1].affiliations[0].raw_affiliation_string | 2 ETH Zurich D-BSSE and Swiss Institute of Bioinformatics, 4058 Basel, Switzerland and |
| authorships[1].affiliations[1].institution_ids | https://openalex.org/I4210118307 |
| authorships[1].affiliations[1].raw_affiliation_string | 3 Life Science Zurich PhD Program on Molecular and Translational Biomedicine and Competence Center for Personalized Medicine, 8092 Zurich, Switzerland |
| authorships[1].institutions[0].id | https://openalex.org/I35440088 |
| authorships[1].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[1].institutions[0].type | education |
| authorships[1].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[1].institutions[0].country_code | CH |
| authorships[1].institutions[0].display_name | ETH Zurich |
| authorships[1].institutions[1].id | https://openalex.org/I4210118307 |
| authorships[1].institutions[1].ror | https://ror.org/02jxpdd90 |
| authorships[1].institutions[1].type | education |
| authorships[1].institutions[1].lineage | https://openalex.org/I4210118307 |
| authorships[1].institutions[1].country_code | CH |
| authorships[1].institutions[1].display_name | Life Science Zurich |
| authorships[1].institutions[2].id | https://openalex.org/I12708293 |
| authorships[1].institutions[2].ror | https://ror.org/002n09z45 |
| authorships[1].institutions[2].type | nonprofit |
| authorships[1].institutions[2].lineage | https://openalex.org/I12708293 |
| authorships[1].institutions[2].country_code | CH |
| authorships[1].institutions[2].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Diana S. M. Ottoz |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | 2 ETH Zurich D-BSSE and Swiss Institute of Bioinformatics, 4058 Basel, Switzerland and, 3 Life Science Zurich PhD Program on Molecular and Translational Biomedicine and Competence Center for Personalized Medicine, 8092 Zurich, Switzerland |
| authorships[2].author.id | https://openalex.org/A5077120195 |
| authorships[2].author.orcid | |
| authorships[2].author.display_name | Juan Mariano Fuentes-Serna |
| authorships[2].countries | CH |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[2].affiliations[0].raw_affiliation_string | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[2].institutions[0].id | https://openalex.org/I35440088 |
| authorships[2].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[2].institutions[0].type | education |
| authorships[2].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[2].institutions[0].country_code | CH |
| authorships[2].institutions[0].display_name | ETH Zurich |
| authorships[2].institutions[1].id | https://openalex.org/I12708293 |
| authorships[2].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[2].institutions[1].type | nonprofit |
| authorships[2].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[2].institutions[1].country_code | CH |
| authorships[2].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Juan Mariano Fuentes-Serna |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[3].author.id | https://openalex.org/A5016217625 |
| authorships[3].author.orcid | https://orcid.org/0000-0003-4180-9378 |
| authorships[3].author.display_name | Chandrasekhar Ramakrishnan |
| authorships[3].countries | CH |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[3].affiliations[0].raw_affiliation_string | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[3].institutions[0].id | https://openalex.org/I35440088 |
| authorships[3].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[3].institutions[0].type | education |
| authorships[3].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[3].institutions[0].country_code | CH |
| authorships[3].institutions[0].display_name | ETH Zurich |
| authorships[3].institutions[1].id | https://openalex.org/I12708293 |
| authorships[3].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[3].institutions[1].type | nonprofit |
| authorships[3].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[3].institutions[1].country_code | CH |
| authorships[3].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Chandrasekhar Ramakrishnan |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[4].author.id | https://openalex.org/A5081462024 |
| authorships[4].author.orcid | |
| authorships[4].author.display_name | Bernd Rinn |
| authorships[4].countries | CH |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[4].affiliations[0].raw_affiliation_string | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[4].institutions[0].id | https://openalex.org/I35440088 |
| authorships[4].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[4].institutions[0].type | education |
| authorships[4].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[4].institutions[0].country_code | CH |
| authorships[4].institutions[0].display_name | ETH Zurich |
| authorships[4].institutions[1].id | https://openalex.org/I12708293 |
| authorships[4].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[4].institutions[1].type | nonprofit |
| authorships[4].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[4].institutions[1].country_code | CH |
| authorships[4].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Bernd Rinn |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | 1 ETH Zurich ID SIS and Swiss Institute of Bioinformatics, 8092 Zurich, Switzerland, |
| authorships[5].author.id | https://openalex.org/A5089249978 |
| authorships[5].author.orcid | https://orcid.org/0000-0001-5264-333X |
| authorships[5].author.display_name | Fabian Rudolf |
| authorships[5].countries | CH |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I12708293, https://openalex.org/I35440088 |
| authorships[5].affiliations[0].raw_affiliation_string | 2 ETH Zurich D-BSSE and Swiss Institute of Bioinformatics, 4058 Basel, Switzerland and |
| authorships[5].institutions[0].id | https://openalex.org/I35440088 |
| authorships[5].institutions[0].ror | https://ror.org/05a28rw58 |
| authorships[5].institutions[0].type | education |
| authorships[5].institutions[0].lineage | https://openalex.org/I2799323385, https://openalex.org/I35440088 |
| authorships[5].institutions[0].country_code | CH |
| authorships[5].institutions[0].display_name | ETH Zurich |
| authorships[5].institutions[1].id | https://openalex.org/I12708293 |
| authorships[5].institutions[1].ror | https://ror.org/002n09z45 |
| authorships[5].institutions[1].type | nonprofit |
| authorships[5].institutions[1].lineage | https://openalex.org/I12708293 |
| authorships[5].institutions[1].country_code | CH |
| authorships[5].institutions[1].display_name | SIB Swiss Institute of Bioinformatics |
| authorships[5].author_position | last |
| authorships[5].raw_author_name | Fabian Rudolf |
| authorships[5].is_corresponding | False |
| authorships[5].raw_affiliation_strings | 2 ETH Zurich D-BSSE and Swiss Institute of Bioinformatics, 4058 Basel, Switzerland and |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdf |
| open_access.oa_status | hybrid |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | openBIS ELN-LIMS: an open-source database for academic laboratories |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T11986 |
| primary_topic.field.id | https://openalex.org/fields/18 |
| primary_topic.field.display_name | Decision Sciences |
| primary_topic.score | 0.9991999864578247 |
| primary_topic.domain.id | https://openalex.org/domains/2 |
| primary_topic.domain.display_name | Social Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1802 |
| primary_topic.subfield.display_name | Information Systems and Management |
| primary_topic.display_name | Scientific Computing and Data Management |
| related_works | https://openalex.org/W2748952813, https://openalex.org/W2366230866, https://openalex.org/W2357906747, https://openalex.org/W2372895414, https://openalex.org/W2382986841, https://openalex.org/W2354060507, https://openalex.org/W2057559115, https://openalex.org/W2371792015, https://openalex.org/W2381929017, https://openalex.org/W2388417751 |
| cited_by_count | 73 |
| counts_by_year[0].year | 2025 |
| counts_by_year[0].cited_by_count | 13 |
| counts_by_year[1].year | 2024 |
| counts_by_year[1].cited_by_count | 9 |
| counts_by_year[2].year | 2023 |
| counts_by_year[2].cited_by_count | 13 |
| counts_by_year[3].year | 2022 |
| counts_by_year[3].cited_by_count | 16 |
| counts_by_year[4].year | 2021 |
| counts_by_year[4].cited_by_count | 4 |
| counts_by_year[5].year | 2020 |
| counts_by_year[5].cited_by_count | 4 |
| counts_by_year[6].year | 2019 |
| counts_by_year[6].cited_by_count | 5 |
| counts_by_year[7].year | 2018 |
| counts_by_year[7].cited_by_count | 3 |
| counts_by_year[8].year | 2017 |
| counts_by_year[8].cited_by_count | 3 |
| counts_by_year[9].year | 2016 |
| counts_by_year[9].cited_by_count | 3 |
| locations_count | 6 |
| best_oa_location.id | doi:10.1093/bioinformatics/btv606 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S52395412 |
| best_oa_location.source.issn | 1367-4803, 1367-4811 |
| best_oa_location.source.type | journal |
| best_oa_location.source.is_oa | False |
| best_oa_location.source.issn_l | 1367-4803 |
| best_oa_location.source.is_core | True |
| best_oa_location.source.is_in_doaj | True |
| best_oa_location.source.display_name | Bioinformatics |
| best_oa_location.source.host_organization | https://openalex.org/P4310311648 |
| best_oa_location.source.host_organization_name | Oxford University Press |
| best_oa_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| best_oa_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| best_oa_location.license | cc-by-nc |
| best_oa_location.pdf_url | https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdf |
| best_oa_location.version | publishedVersion |
| best_oa_location.raw_type | journal-article |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by-nc |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | True |
| best_oa_location.raw_source_name | Bioinformatics |
| best_oa_location.landing_page_url | https://doi.org/10.1093/bioinformatics/btv606 |
| primary_location.id | doi:10.1093/bioinformatics/btv606 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S52395412 |
| primary_location.source.issn | 1367-4803, 1367-4811 |
| primary_location.source.type | journal |
| primary_location.source.is_oa | False |
| primary_location.source.issn_l | 1367-4803 |
| primary_location.source.is_core | True |
| primary_location.source.is_in_doaj | True |
| primary_location.source.display_name | Bioinformatics |
| primary_location.source.host_organization | https://openalex.org/P4310311648 |
| primary_location.source.host_organization_name | Oxford University Press |
| primary_location.source.host_organization_lineage | https://openalex.org/P4310311648, https://openalex.org/P4310311647 |
| primary_location.source.host_organization_lineage_names | Oxford University Press, University of Oxford |
| primary_location.license | cc-by-nc |
| primary_location.pdf_url | https://academic.oup.com/bioinformatics/article-pdf/32/4/638/49017686/bioinformatics_32_4_638.pdf |
| primary_location.version | publishedVersion |
| primary_location.raw_type | journal-article |
| primary_location.license_id | https://openalex.org/licenses/cc-by-nc |
| primary_location.is_accepted | True |
| primary_location.is_published | True |
| primary_location.raw_source_name | Bioinformatics |
| primary_location.landing_page_url | https://doi.org/10.1093/bioinformatics/btv606 |
| publication_date | 2015-10-27 |
| publication_year | 2015 |
| referenced_works | https://openalex.org/W2055043387, https://openalex.org/W2122344857, https://openalex.org/W2053091815, https://openalex.org/W2116506837, https://openalex.org/W2122139514 |
| referenced_works_count | 5 |
| abstract_inverted_index.a | 16, 55, 74, 78, 112 |
| abstract_inverted_index.an | 11, 95 |
| abstract_inverted_index.as | 94 |
| abstract_inverted_index.at | 83 |
| abstract_inverted_index.be | 62 |
| abstract_inverted_index.et | 105 |
| abstract_inverted_index.is | 118 |
| abstract_inverted_index.of | 101, 115 |
| abstract_inverted_index.or | 123 |
| abstract_inverted_index.to | 34, 39, 45, 97 |
| abstract_inverted_index.For | 108 |
| abstract_inverted_index.The | 2, 51, 71, 85 |
| abstract_inverted_index.and | 15, 42, 44, 48, 66, 69, 77 |
| abstract_inverted_index.are | 81 |
| abstract_inverted_index.can | 61 |
| abstract_inverted_index.for | 24 |
| abstract_inverted_index.our | 92 |
| abstract_inverted_index.raw | 47 |
| abstract_inverted_index.the | 25, 99, 102, 116 |
| abstract_inverted_index.web | 57 |
| abstract_inverted_index.al., | 106 |
| abstract_inverted_index.also | 119 |
| abstract_inverted_index.data | 60, 90 |
| abstract_inverted_index.demo | 79, 86 |
| abstract_inverted_index.from | 91 |
| abstract_inverted_index.life | 27 |
| abstract_inverted_index.some | 89 |
| abstract_inverted_index.user | 75 |
| abstract_inverted_index.with | 54 |
| abstract_inverted_index.(open | 6 |
| abstract_inverted_index.comes | 53 |
| abstract_inverted_index.data. | 50 |
| abstract_inverted_index.guide | 76 |
| abstract_inverted_index.image | 114 |
| abstract_inverted_index.local | 110 |
| abstract_inverted_index.rapid | 109 |
| abstract_inverted_index.their | 37 |
| abstract_inverted_index.where | 59 |
| abstract_inverted_index.work, | 38 |
| abstract_inverted_index.(Ottoz | 104 |
| abstract_inverted_index.2014). | 107 |
| abstract_inverted_index.System | 20 |
| abstract_inverted_index.added, | 63 |
| abstract_inverted_index.allows | 32 |
| abstract_inverted_index.offers | 10 |
| abstract_inverted_index.system | 52 |
| abstract_inverted_index.Biology | 7 |
| abstract_inverted_index.System) | 9 |
| abstract_inverted_index.browsed | 65 |
| abstract_inverted_index.collect | 46 |
| abstract_inverted_index.edited, | 64 |
| abstract_inverted_index.example | 96 |
| abstract_inverted_index.methods | 43 |
| abstract_inverted_index.openBIS | 5, 30, 72 |
| abstract_inverted_index.science | 28 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.Contact: | 121 |
| abstract_inverted_index.ELN-LIMS | 31, 103, 117 |
| abstract_inverted_index.Notebook | 14 |
| abstract_inverted_index.Summary: | 1 |
| abstract_inverted_index.academic | 26 |
| abstract_inverted_index.analyzed | 49 |
| abstract_inverted_index.contains | 88 |
| abstract_inverted_index.describe | 40 |
| abstract_inverted_index.document | 36 |
| abstract_inverted_index.instance | 80, 87 |
| abstract_inverted_index.platform | 4 |
| abstract_inverted_index.solution | 22 |
| abstract_inverted_index.suitable | 23 |
| abstract_inverted_index.testing, | 111 |
| abstract_inverted_index.available | 82 |
| abstract_inverted_index.interface | 58 |
| abstract_inverted_index.materials | 41 |
| abstract_inverted_index.searched. | 67 |
| abstract_inverted_index.software, | 73 |
| abstract_inverted_index.(ELN-LIMS) | 21 |
| abstract_inverted_index.Electronic | 12 |
| abstract_inverted_index.Laboratory | 13, 17 |
| abstract_inverted_index.Management | 19 |
| abstract_inverted_index.VirtualBox | 113 |
| abstract_inverted_index.available. | 120 |
| abstract_inverted_index.laboratory | 93 |
| abstract_inverted_index.Information | 8, 18 |
| abstract_inverted_index.demonstrate | 98 |
| abstract_inverted_index.efficiently | 35 |
| abstract_inverted_index.open-source | 3 |
| abstract_inverted_index.researchers | 33 |
| abstract_inverted_index.Availability | 68 |
| [email protected] | 122 |
| abstract_inverted_index.laboratories. | 29 |
| abstract_inverted_index.possibilities | 100 |
| abstract_inverted_index.user-friendly | 56 |
| abstract_inverted_index.implementation: | 70 |
| [email protected] | 124 |
| abstract_inverted_index.https://openbis-eln-lims.ethz.ch. | 84 |
| cited_by_percentile_year.max | 100 |
| cited_by_percentile_year.min | 96 |
| countries_distinct_count | 1 |
| institutions_distinct_count | 6 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/12 |
| sustainable_development_goals[0].score | 0.5099999904632568 |
| sustainable_development_goals[0].display_name | Responsible consumption and production |
| citation_normalized_percentile.value | 0.96863763 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | True |