OpenMS WebApps: Building User-Friendly Solutions for MS Analysis Article Swipe
Tom David Müller
,
Arslan Siraj
,
Axel Walter
,
Jihyung Kim
,
Samuel Wein
,
Johannes von Kleist
,
Ayesha Feroz
,
Matteo Pilz
,
Kyowon Jeong
,
Justin Sing
,
Joshua Charkow
,
Hannes Röst
,
Timo Sachsenberg
·
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1021/acs.jproteome.4c00872
YOU?
·
· 2025
· Open Access
·
· DOI: https://doi.org/10.1021/acs.jproteome.4c00872
Liquid chromatography-mass spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be challenging for nonexperts. To address this, we have developed OpenMS WebApps, a framework for creating user-friendly MS web applications based on the Streamlit Python package. OpenMS WebApps simplifies MS data analysis through an intuitive graphical user interface, interactive result visualizations, and support for both local and online execution. Key features include workspace management, automatic generation of input widgets, and parallel execution of tools, resulting in high performance and ready-to-use solutions for online and local deployment. This framework benefits both researchers and developers: scientists can focus on their research without the burden of complex software setups, and developers can rapidly create and distribute custom WebApps with novel algorithms. Several applications built on the OpenMS WebApps template demonstrate its utility across diverse MS-related fields, enhancing the OpenMS ecosystem for developers and a wider range of users. Furthermore, it integrates seamlessly with third-party software, extending its benefits to developers beyond the OpenMS community.
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Metadata
- Type
- article
- Language
- en
- Landing Page
- https://doi.org/10.1021/acs.jproteome.4c00872
- OA Status
- hybrid
- Cited By
- 4
- References
- 20
- Related Works
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- OpenAlex ID
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All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
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https://openalex.org/W4406998278Canonical identifier for this work in OpenAlex
- DOI
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https://doi.org/10.1021/acs.jproteome.4c00872Digital Object Identifier
- Title
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OpenMS WebApps: Building User-Friendly Solutions for MS AnalysisWork title
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articleOpenAlex work type
- Language
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enPrimary language
- Publication year
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2025Year of publication
- Publication date
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2025-01-30Full publication date if available
- Authors
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Tom David Müller, Arslan Siraj, Axel Walter, Jihyung Kim, Samuel Wein, Johannes von Kleist, Ayesha Feroz, Matteo Pilz, Kyowon Jeong, Justin Sing, Joshua Charkow, Hannes Röst, Timo SachsenbergList of authors in order
- Landing page
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https://doi.org/10.1021/acs.jproteome.4c00872Publisher landing page
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YesWhether a free full text is available
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hybridOpen access status per OpenAlex
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https://doi.org/10.1021/acs.jproteome.4c00872Direct OA link when available
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Computer science, User Friendly, Environmentally friendly, Chemistry, Operating system, Biology, EcologyTop concepts (fields/topics) attached by OpenAlex
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4Total citation count in OpenAlex
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2025: 4Per-year citation counts (last 5 years)
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10Other works algorithmically related by OpenAlex
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| abstract_inverted_index.complex | 122 |
| abstract_inverted_index.diverse | 149 |
| abstract_inverted_index.fields, | 151 |
| abstract_inverted_index.include | 80 |
| abstract_inverted_index.rapidly | 128 |
| abstract_inverted_index.setups, | 124 |
| abstract_inverted_index.support | 71 |
| abstract_inverted_index.through | 61 |
| abstract_inverted_index.utility | 147 |
| abstract_inverted_index.without | 118 |
| abstract_inverted_index.WebApps, | 40 |
| abstract_inverted_index.advanced | 19 |
| abstract_inverted_index.analysis | 60 |
| abstract_inverted_index.benefits | 107, 173 |
| abstract_inverted_index.creating | 44 |
| abstract_inverted_index.features | 79 |
| abstract_inverted_index.package. | 54 |
| abstract_inverted_index.parallel | 89 |
| abstract_inverted_index.provides | 18 |
| abstract_inverted_index.research | 117 |
| abstract_inverted_index.software | 21, 123 |
| abstract_inverted_index.template | 144 |
| abstract_inverted_index.widgets, | 87 |
| abstract_inverted_index.Streamlit | 52 |
| abstract_inverted_index.analysis, | 25 |
| abstract_inverted_index.automatic | 83 |
| abstract_inverted_index.developed | 38 |
| abstract_inverted_index.ecosystem | 155 |
| abstract_inverted_index.enhancing | 152 |
| abstract_inverted_index.execution | 90 |
| abstract_inverted_index.extending | 171 |
| abstract_inverted_index.framework | 42, 106 |
| abstract_inverted_index.graphical | 64 |
| abstract_inverted_index.intuitive | 63 |
| abstract_inverted_index.resulting | 93 |
| abstract_inverted_index.sciences. | 15 |
| abstract_inverted_index.software, | 170 |
| abstract_inverted_index.solutions | 99 |
| abstract_inverted_index.technique | 8 |
| abstract_inverted_index.workspace | 81 |
| abstract_inverted_index.MS-related | 150 |
| abstract_inverted_index.analytical | 7 |
| abstract_inverted_index.community. | 179 |
| abstract_inverted_index.complexity | 27 |
| abstract_inverted_index.developers | 126, 157, 175 |
| abstract_inverted_index.distribute | 131 |
| abstract_inverted_index.execution. | 77 |
| abstract_inverted_index.generation | 84 |
| abstract_inverted_index.integrates | 166 |
| abstract_inverted_index.interface, | 66 |
| abstract_inverted_index.scientists | 112 |
| abstract_inverted_index.seamlessly | 167 |
| abstract_inverted_index.simplifies | 57 |
| abstract_inverted_index.algorithms. | 136 |
| abstract_inverted_index.challenging | 30 |
| abstract_inverted_index.demonstrate | 145 |
| abstract_inverted_index.deployment. | 104 |
| abstract_inverted_index.developers: | 111 |
| abstract_inverted_index.interactive | 67 |
| abstract_inverted_index.management, | 82 |
| abstract_inverted_index.nonexperts. | 32 |
| abstract_inverted_index.open-source | 20 |
| abstract_inverted_index.performance | 96 |
| abstract_inverted_index.proteomics, | 10 |
| abstract_inverted_index.researchers | 109 |
| abstract_inverted_index.third-party | 169 |
| abstract_inverted_index.Furthermore, | 164 |
| abstract_inverted_index.applications | 48, 138 |
| abstract_inverted_index.ready-to-use | 98 |
| abstract_inverted_index.spectrometry | 2 |
| abstract_inverted_index.indispensable | 6 |
| abstract_inverted_index.metabolomics, | 11 |
| abstract_inverted_index.user-friendly | 45 |
| abstract_inverted_index.visualizations, | 69 |
| abstract_inverted_index.chromatography-mass | 1 |
| cited_by_percentile_year.max | 98 |
| cited_by_percentile_year.min | 97 |
| corresponding_author_ids | https://openalex.org/A5058994478, https://openalex.org/A5053274567 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 13 |
| corresponding_institution_ids | https://openalex.org/I185261750, https://openalex.org/I8087733 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/9 |
| sustainable_development_goals[0].score | 0.5299999713897705 |
| sustainable_development_goals[0].display_name | Industry, innovation and infrastructure |
| citation_normalized_percentile.value | 0.98990994 |
| citation_normalized_percentile.is_in_top_1_percent | True |
| citation_normalized_percentile.is_in_top_10_percent | True |