Peer Review #1 of "Complete genome sequence and comparative genomics of the golden pompano (Trachinotus ovatus) pathogen, Vibrio harveyi strain QT520 (v0.1)" Article Swipe
Zhigang Tu
,
Hongyue Li
,
Xiang Zhang
,
Yun Sun
,
Yongcan Zhou
,
Yongcan Zhou
,
Zhighng Tu
,
Xihng Zhhng
,
Yongchn Zhou
,
Sthte Lhborhtory
,
P Chinh
·
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.7287/peerj.4127v0.1/reviews/1
YOU?
·
· 2017
· Open Access
·
· DOI: https://doi.org/10.7287/peerj.4127v0.1/reviews/1
Vibrio harveyi is a Gram-negative, halophilic bacterium that is an opportunistic pathogen of commercially farmed marine vertebrate species.To understand the pathogenicity of this species, the genome of V. harveyi QT520 was analyzed and compared to that of other strains.The results showed the genome of QT520 has two unique circular chromosomes and three endogenous plasmids, totaling 6,070,846 bp with a 45% GC content, 5701 predicted ORFs, 134 tRNAs and 37 rRNAs.Common virulence factors, including ACF, IlpA, OmpU, Flagellin, Cya, Hemolysin and MARTX, were detected in the genome, which are likely responsible for the virulence of QT520.The results of genomes comparisons with strains ATCC 33843 (392 [MAV]) and ATCC 43516 showed that greater numbers genes associated with types I, II, III, IV and VI secretion systems were detected in QT520 than in other strains, suggesting that QT520 is a highly virulent strain.In addition, three plasmids were only observed in the complete genome sequence of strain QT520.In plasmid p1 of QT520, specific virulence factors (cyaB, hlyB and rtxA) were identified, suggesting that the pathogenicity of this strain is plasmid-associated.Phylogenetic analysis of 12 complete Vibrio sp.genomes using ANI values, core genes and MLST revealed that QT520 was most closely related to ATCC 33843 (392 [MAV]) and ATCC 43516, suggesting that QT520 belongs to the species V. harveyi.This report is the first to describe the complete genome sequence of a V. harveyi strain isolated from an outbreak in a fish species in China.In addition, to the best of our knowledge, this report is the first to compare the V. harveyi genomes of several strains.The results of this study will expand our understanding of the genome, genetic characteristics, and virulence factors of V. harveyi, setting the stage for studies of pathogenesis, diagnostics, and disease prevention.
Related Topics
Concepts
Vibrio harveyi
Biology
Whole genome sequencing
Strain (injury)
Fishery
Genome
Microbiology
Genetics
Vibrio
Gene
Anatomy
Bacteria
Metadata
- Type
- peer-review
- Language
- en
- Landing Page
- https://doi.org/10.7287/peerj.4127v0.1/reviews/1
- https://peerj.com/articles/4127v0.3/submission
- OA Status
- gold
- References
- 38
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W4231281407
All OpenAlex metadata
Raw OpenAlex JSON
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- DOI
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https://doi.org/10.7287/peerj.4127v0.1/reviews/1Digital Object Identifier
- Title
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Peer Review #1 of "Complete genome sequence and comparative genomics of the golden pompano (Trachinotus ovatus) pathogen, Vibrio harveyi strain QT520 (v0.1)"Work title
- Type
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peer-reviewOpenAlex work type
- Language
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enPrimary language
- Publication year
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2017Year of publication
- Publication date
-
2017-12-08Full publication date if available
- Authors
-
Zhigang Tu, Hongyue Li, Xiang Zhang, Yun Sun, Yongcan Zhou, Yongcan Zhou, Zhighng Tu, Xihng Zhhng, Yongchn Zhou, Sthte Lhborhtory, P ChinhList of authors in order
- Landing page
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https://doi.org/10.7287/peerj.4127v0.1/reviews/1Publisher landing page
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https://peerj.com/articles/4127v0.3/submissionDirect link to full text PDF
- Open access
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YesWhether a free full text is available
- OA status
-
goldOpen access status per OpenAlex
- OA URL
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https://peerj.com/articles/4127v0.3/submissionDirect OA link when available
- Concepts
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Vibrio harveyi, Biology, Whole genome sequencing, Strain (injury), Fishery, Genome, Microbiology, Genetics, Vibrio, Gene, Anatomy, BacteriaTop concepts (fields/topics) attached by OpenAlex
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0Total citation count in OpenAlex
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38Number of works referenced by this work
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10Other works algorithmically related by OpenAlex
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