Peer Review #2 of "Identification of a genome-specific repetitive element in the Gossypium D genome (v0.2)" Article Swipe
Hejun Lu
,
Xinglei Cui
,
Yanyan Zhao
,
Richard Odongo Magwanga
,
Pengcheng Li
,
Xiaoyan Cai
,
Zhongli Zhou
,
Xingxing Wang
,
Yuling Liu
,
Yanchao Xu
,
Yuqing Hou
,
Renhai Peng
,
Kunbo Wang
,
Fang Liu
·
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.7287/peerj.8344v0.2/reviews/2
YOU?
·
· 2020
· Open Access
·
· DOI: https://doi.org/10.7287/peerj.8344v0.2/reviews/2
The activity of genome-specific repetitive sequences is the main cause of genome variation between Gossypium A and D genomes.Through comparative analysis of the two genomes, we retrieved a repetitive element termed ICRd motif, which appears frequently in the diploid Gossypium raimondii (D 5 ) genome but rarely in the diploid Gossypium arboreum (A 2 ) genome.We further explored the existence of the ICRd motif in chromosomes of G. raimondii, G. arboreum, and two tetraploid (AADD) cotton species, Gossypium hirsutum and Gossypium barbadense, by fluorescence in situ hybridization (FISH), and observed that the ICRd motif exists in the D 5 and Dsubgenomes but not in the A 2 and A-subgenomes.The ICRd motif comprises two components, a variable tandem repeat (TR) region and a conservative sequence (CS).The two constituents each have hundreds of repeats that evenly distribute across 13 chromosomes of the D 5 genome.The ICRd motif (and its repeats) was revealed as the common conservative region harbored by ancient Long Terminal Repeat Retrotransposons.Identification and investigation of the ICRd motif promotes the study of A and D genome differences, facilitates research on Gossypium genome evolution, and provides assistance to subgenome identification and genome assembling.
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- Type
- peer-review
- Language
- en
- Landing Page
- https://doi.org/10.7287/peerj.8344v0.2/reviews/2
- OA Status
- gold
- References
- 63
- Related Works
- 10
- OpenAlex ID
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- DOI
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https://doi.org/10.7287/peerj.8344v0.2/reviews/2Digital Object Identifier
- Title
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Peer Review #2 of "Identification of a genome-specific repetitive element in the Gossypium D genome (v0.2)"Work title
- Type
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peer-reviewOpenAlex work type
- Language
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enPrimary language
- Publication year
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2020Year of publication
- Publication date
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2020-01-03Full publication date if available
- Authors
-
Hejun Lu, Xinglei Cui, Yanyan Zhao, Richard Odongo Magwanga, Pengcheng Li, Xiaoyan Cai, Zhongli Zhou, Xingxing Wang, Yuling Liu, Yanchao Xu, Yuqing Hou, Renhai Peng, Kunbo Wang, Fang LiuList of authors in order
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https://doi.org/10.7287/peerj.8344v0.2/reviews/2Publisher landing page
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YesWhether a free full text is available
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goldOpen access status per OpenAlex
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https://doi.org/10.7287/peerj.8344v0.2/reviews/2Direct OA link when available
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Identification (biology), Genome, Computational biology, Biology, Genetics, Evolutionary biology, Gene, BotanyTop concepts (fields/topics) attached by OpenAlex
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0Total citation count in OpenAlex
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10Other works algorithmically related by OpenAlex
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