arXiv (Cornell University)
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
November 2025 • Jost, Paul Jonas, Bergmann, Frank T., Weindl, Daniel, Hasenauer, Jan
Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerful community standard to encode parameter estimation problems, promoting interoperability and reusability. However, its reliance on multiple interlinked files - often edited manually - can introduce inconsistencies, and new users often struggle to navigate them. Here, we present P…