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arXiv (Cornell University)
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
November 2025 • Jost, Paul Jonas, Bergmann, Frank T., Weindl, Daniel, Hasenauer, Jan
Motivation: Parameter estimation is a cornerstone of data-driven modeling in systems biology. Yet, constructing such problems in a reproducible and accessible manner remains challenging. The PEtab format has established itself as a powerful community standard to encode parameter estimation problems, promoting interoperability and reusability. However, its reliance on multiple interlinked files - often edited manually - can introduce inconsistencies, and new users often struggle to navigate them. Here, we present P…
Computer Science
Graphical User Interface
Interoperability
Modular Design
Visualization (Graphics)
User Interface
Human–Computer Interaction
Infographic
Data And Information Visualization
Lock And Key
Data Mining
Graphical Model
Software Engineering
Plug-In (Computing)
Programming Language
Markup Language
File Format
Estimation
Computer Graphics
Theoretical Computer Science