Potential of genomic selection for improvement of resistance to Ostreid Herpes virus in Pacific oyster (Crassostrea gigas) Article Swipe
Alejandro P. Gutiérrez
,
Jane E. Symonds
,
Nick King
,
Konstanze Steiner
,
Tim P. Bean
,
Ross D. Houston
·
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1101/754473
YOU?
·
· 2019
· Open Access
·
· DOI: https://doi.org/10.1101/754473
In genomic selection (GS), genome-wide SNP markers are used to generate genomic estimated breeding values (gEBVs) for selection candidates. The application of GS in shellfish looks promising and has the potential to help in dealing with one of the main issues currently affecting Pacific oyster production worldwide, which is the “summer mortality syndrome”. This causes periodic mass mortality in farms worldwide and has mainly been attributed to a specific variant of the Ostreid herpesvirus (OsHV-1-μvar). In the current study, we evaluated the potential of genomic selection for host resistance OsHV in Pacific oysters, and compared it to pedigree-based approaches. An OsHV-1 disease challenge was performed using an immersion-based virus exposure treatment for oysters for seven days. 768 samples were genotyped using the medium density SNP array for oysters. GWAS was performed for the survival trait using a GBLUP approach in BLUPF90 software. Heritability ranged from 0.25±0.05 to 0.37±0.05 (mean±s.e) based on pedigree and genomic information, respectively. Genomic prediction was more accurate than pedigree prediction, and SNP density reduction had little impact on prediction accuracy until marker densities dropped below ∼500 SNPs. This demonstrates the potential for GS in Pacific oyster breeding programs and importantly, demonstrates that a low number of SNPs might suffice to obtain accurate gEBVs, thus potentially making the implementation of GS more cost effective.
Related Topics
Concepts
Pacific oyster
Crassostrea
Biology
Oyster
Heritability
SNP
Single-nucleotide polymorphism
Selection (genetic algorithm)
Plant disease resistance
Genetic gain
Selective breeding
Genetics
Biotechnology
Fishery
Genetic variation
Gene
Genotype
Computer science
Artificial intelligence
Metadata
- Type
- preprint
- Language
- en
- Landing Page
- https://doi.org/10.1101/754473
- https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdf
- OA Status
- green
- Cited By
- 3
- References
- 48
- Related Works
- 10
- OpenAlex ID
- https://openalex.org/W2971422380
All OpenAlex metadata
Raw OpenAlex JSON
- OpenAlex ID
-
https://openalex.org/W2971422380Canonical identifier for this work in OpenAlex
- DOI
-
https://doi.org/10.1101/754473Digital Object Identifier
- Title
-
Potential of genomic selection for improvement of resistance to Ostreid Herpes virus in Pacific oyster (Crassostrea gigas)Work title
- Type
-
preprintOpenAlex work type
- Language
-
enPrimary language
- Publication year
-
2019Year of publication
- Publication date
-
2019-09-05Full publication date if available
- Authors
-
Alejandro P. Gutiérrez, Jane E. Symonds, Nick King, Konstanze Steiner, Tim P. Bean, Ross D. HoustonList of authors in order
- Landing page
-
https://doi.org/10.1101/754473Publisher landing page
- PDF URL
-
https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdfDirect link to full text PDF
- Open access
-
YesWhether a free full text is available
- OA status
-
greenOpen access status per OpenAlex
- OA URL
-
https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdfDirect OA link when available
- Concepts
-
Pacific oyster, Crassostrea, Biology, Oyster, Heritability, SNP, Single-nucleotide polymorphism, Selection (genetic algorithm), Plant disease resistance, Genetic gain, Selective breeding, Genetics, Biotechnology, Fishery, Genetic variation, Gene, Genotype, Computer science, Artificial intelligenceTop concepts (fields/topics) attached by OpenAlex
- Cited by
-
3Total citation count in OpenAlex
- Citations by year (recent)
-
2021: 1, 2020: 1, 2019: 1Per-year citation counts (last 5 years)
- References (count)
-
48Number of works referenced by this work
- Related works (count)
-
10Other works algorithmically related by OpenAlex
Full payload
| id | https://openalex.org/W2971422380 |
|---|---|
| doi | https://doi.org/10.1101/754473 |
| ids.doi | https://doi.org/10.1101/754473 |
| ids.mag | 2971422380 |
| ids.openalex | https://openalex.org/W2971422380 |
| fwci | 0.53287575 |
| type | preprint |
| title | Potential of genomic selection for improvement of resistance to Ostreid Herpes virus in Pacific oyster (Crassostrea gigas) |
| biblio.issue | |
| biblio.volume | |
| biblio.last_page | |
| biblio.first_page | |
| topics[0].id | https://openalex.org/T10594 |
| topics[0].field.id | https://openalex.org/fields/13 |
| topics[0].field.display_name | Biochemistry, Genetics and Molecular Biology |
| topics[0].score | 0.9993000030517578 |
| topics[0].domain.id | https://openalex.org/domains/1 |
| topics[0].domain.display_name | Life Sciences |
| topics[0].subfield.id | https://openalex.org/subfields/1311 |
| topics[0].subfield.display_name | Genetics |
| topics[0].display_name | Genetic and phenotypic traits in livestock |
| topics[1].id | https://openalex.org/T11088 |
| topics[1].field.id | https://openalex.org/fields/23 |
| topics[1].field.display_name | Environmental Science |
| topics[1].score | 0.9926999807357788 |
| topics[1].domain.id | https://openalex.org/domains/3 |
| topics[1].domain.display_name | Physical Sciences |
| topics[1].subfield.id | https://openalex.org/subfields/2306 |
| topics[1].subfield.display_name | Global and Planetary Change |
| topics[1].display_name | Marine Bivalve and Aquaculture Studies |
| topics[2].id | https://openalex.org/T10506 |
| topics[2].field.id | https://openalex.org/fields/24 |
| topics[2].field.display_name | Immunology and Microbiology |
| topics[2].score | 0.9764000177383423 |
| topics[2].domain.id | https://openalex.org/domains/1 |
| topics[2].domain.display_name | Life Sciences |
| topics[2].subfield.id | https://openalex.org/subfields/2403 |
| topics[2].subfield.display_name | Immunology |
| topics[2].display_name | Aquaculture disease management and microbiota |
| is_xpac | False |
| apc_list | |
| apc_paid | |
| concepts[0].id | https://openalex.org/C2781047198 |
| concepts[0].level | 4 |
| concepts[0].score | 0.7877534627914429 |
| concepts[0].wikidata | https://www.wikidata.org/wiki/Q20857 |
| concepts[0].display_name | Pacific oyster |
| concepts[1].id | https://openalex.org/C2776845067 |
| concepts[1].level | 3 |
| concepts[1].score | 0.7658405303955078 |
| concepts[1].wikidata | https://www.wikidata.org/wiki/Q542708 |
| concepts[1].display_name | Crassostrea |
| concepts[2].id | https://openalex.org/C86803240 |
| concepts[2].level | 0 |
| concepts[2].score | 0.7655375599861145 |
| concepts[2].wikidata | https://www.wikidata.org/wiki/Q420 |
| concepts[2].display_name | Biology |
| concepts[3].id | https://openalex.org/C2776364969 |
| concepts[3].level | 2 |
| concepts[3].score | 0.6264922022819519 |
| concepts[3].wikidata | https://www.wikidata.org/wiki/Q107411 |
| concepts[3].display_name | Oyster |
| concepts[4].id | https://openalex.org/C161890455 |
| concepts[4].level | 2 |
| concepts[4].score | 0.5581783652305603 |
| concepts[4].wikidata | https://www.wikidata.org/wiki/Q1503548 |
| concepts[4].display_name | Heritability |
| concepts[5].id | https://openalex.org/C139275648 |
| concepts[5].level | 5 |
| concepts[5].score | 0.5550127029418945 |
| concepts[5].wikidata | https://www.wikidata.org/wiki/Q17134011 |
| concepts[5].display_name | SNP |
| concepts[6].id | https://openalex.org/C153209595 |
| concepts[6].level | 4 |
| concepts[6].score | 0.5402355790138245 |
| concepts[6].wikidata | https://www.wikidata.org/wiki/Q501128 |
| concepts[6].display_name | Single-nucleotide polymorphism |
| concepts[7].id | https://openalex.org/C81917197 |
| concepts[7].level | 2 |
| concepts[7].score | 0.5045305490493774 |
| concepts[7].wikidata | https://www.wikidata.org/wiki/Q628760 |
| concepts[7].display_name | Selection (genetic algorithm) |
| concepts[8].id | https://openalex.org/C93678976 |
| concepts[8].level | 3 |
| concepts[8].score | 0.48011207580566406 |
| concepts[8].wikidata | https://www.wikidata.org/wiki/Q4215946 |
| concepts[8].display_name | Plant disease resistance |
| concepts[9].id | https://openalex.org/C2778890363 |
| concepts[9].level | 4 |
| concepts[9].score | 0.43889346718788147 |
| concepts[9].wikidata | https://www.wikidata.org/wiki/Q550479 |
| concepts[9].display_name | Genetic gain |
| concepts[10].id | https://openalex.org/C12558332 |
| concepts[10].level | 2 |
| concepts[10].score | 0.43852925300598145 |
| concepts[10].wikidata | https://www.wikidata.org/wiki/Q995745 |
| concepts[10].display_name | Selective breeding |
| concepts[11].id | https://openalex.org/C54355233 |
| concepts[11].level | 1 |
| concepts[11].score | 0.3623553514480591 |
| concepts[11].wikidata | https://www.wikidata.org/wiki/Q7162 |
| concepts[11].display_name | Genetics |
| concepts[12].id | https://openalex.org/C150903083 |
| concepts[12].level | 1 |
| concepts[12].score | 0.3407306671142578 |
| concepts[12].wikidata | https://www.wikidata.org/wiki/Q7108 |
| concepts[12].display_name | Biotechnology |
| concepts[13].id | https://openalex.org/C505870484 |
| concepts[13].level | 1 |
| concepts[13].score | 0.23939725756645203 |
| concepts[13].wikidata | https://www.wikidata.org/wiki/Q180538 |
| concepts[13].display_name | Fishery |
| concepts[14].id | https://openalex.org/C68873052 |
| concepts[14].level | 3 |
| concepts[14].score | 0.2277843952178955 |
| concepts[14].wikidata | https://www.wikidata.org/wiki/Q349856 |
| concepts[14].display_name | Genetic variation |
| concepts[15].id | https://openalex.org/C104317684 |
| concepts[15].level | 2 |
| concepts[15].score | 0.19378694891929626 |
| concepts[15].wikidata | https://www.wikidata.org/wiki/Q7187 |
| concepts[15].display_name | Gene |
| concepts[16].id | https://openalex.org/C135763542 |
| concepts[16].level | 3 |
| concepts[16].score | 0.10576936602592468 |
| concepts[16].wikidata | https://www.wikidata.org/wiki/Q106016 |
| concepts[16].display_name | Genotype |
| concepts[17].id | https://openalex.org/C41008148 |
| concepts[17].level | 0 |
| concepts[17].score | 0.06054648756980896 |
| concepts[17].wikidata | https://www.wikidata.org/wiki/Q21198 |
| concepts[17].display_name | Computer science |
| concepts[18].id | https://openalex.org/C154945302 |
| concepts[18].level | 1 |
| concepts[18].score | 0.0 |
| concepts[18].wikidata | https://www.wikidata.org/wiki/Q11660 |
| concepts[18].display_name | Artificial intelligence |
| keywords[0].id | https://openalex.org/keywords/pacific-oyster |
| keywords[0].score | 0.7877534627914429 |
| keywords[0].display_name | Pacific oyster |
| keywords[1].id | https://openalex.org/keywords/crassostrea |
| keywords[1].score | 0.7658405303955078 |
| keywords[1].display_name | Crassostrea |
| keywords[2].id | https://openalex.org/keywords/biology |
| keywords[2].score | 0.7655375599861145 |
| keywords[2].display_name | Biology |
| keywords[3].id | https://openalex.org/keywords/oyster |
| keywords[3].score | 0.6264922022819519 |
| keywords[3].display_name | Oyster |
| keywords[4].id | https://openalex.org/keywords/heritability |
| keywords[4].score | 0.5581783652305603 |
| keywords[4].display_name | Heritability |
| keywords[5].id | https://openalex.org/keywords/snp |
| keywords[5].score | 0.5550127029418945 |
| keywords[5].display_name | SNP |
| keywords[6].id | https://openalex.org/keywords/single-nucleotide-polymorphism |
| keywords[6].score | 0.5402355790138245 |
| keywords[6].display_name | Single-nucleotide polymorphism |
| keywords[7].id | https://openalex.org/keywords/selection |
| keywords[7].score | 0.5045305490493774 |
| keywords[7].display_name | Selection (genetic algorithm) |
| keywords[8].id | https://openalex.org/keywords/plant-disease-resistance |
| keywords[8].score | 0.48011207580566406 |
| keywords[8].display_name | Plant disease resistance |
| keywords[9].id | https://openalex.org/keywords/genetic-gain |
| keywords[9].score | 0.43889346718788147 |
| keywords[9].display_name | Genetic gain |
| keywords[10].id | https://openalex.org/keywords/selective-breeding |
| keywords[10].score | 0.43852925300598145 |
| keywords[10].display_name | Selective breeding |
| keywords[11].id | https://openalex.org/keywords/genetics |
| keywords[11].score | 0.3623553514480591 |
| keywords[11].display_name | Genetics |
| keywords[12].id | https://openalex.org/keywords/biotechnology |
| keywords[12].score | 0.3407306671142578 |
| keywords[12].display_name | Biotechnology |
| keywords[13].id | https://openalex.org/keywords/fishery |
| keywords[13].score | 0.23939725756645203 |
| keywords[13].display_name | Fishery |
| keywords[14].id | https://openalex.org/keywords/genetic-variation |
| keywords[14].score | 0.2277843952178955 |
| keywords[14].display_name | Genetic variation |
| keywords[15].id | https://openalex.org/keywords/gene |
| keywords[15].score | 0.19378694891929626 |
| keywords[15].display_name | Gene |
| keywords[16].id | https://openalex.org/keywords/genotype |
| keywords[16].score | 0.10576936602592468 |
| keywords[16].display_name | Genotype |
| keywords[17].id | https://openalex.org/keywords/computer-science |
| keywords[17].score | 0.06054648756980896 |
| keywords[17].display_name | Computer science |
| language | en |
| locations[0].id | doi:10.1101/754473 |
| locations[0].is_oa | True |
| locations[0].source.id | https://openalex.org/S4306402567 |
| locations[0].source.issn | |
| locations[0].source.type | repository |
| locations[0].source.is_oa | False |
| locations[0].source.issn_l | |
| locations[0].source.is_core | False |
| locations[0].source.is_in_doaj | False |
| locations[0].source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| locations[0].source.host_organization | https://openalex.org/I2750212522 |
| locations[0].source.host_organization_name | Cold Spring Harbor Laboratory |
| locations[0].source.host_organization_lineage | https://openalex.org/I2750212522 |
| locations[0].license | cc-by-nc-nd |
| locations[0].pdf_url | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdf |
| locations[0].version | acceptedVersion |
| locations[0].raw_type | posted-content |
| locations[0].license_id | https://openalex.org/licenses/cc-by-nc-nd |
| locations[0].is_accepted | True |
| locations[0].is_published | False |
| locations[0].raw_source_name | |
| locations[0].landing_page_url | https://doi.org/10.1101/754473 |
| indexed_in | crossref |
| authorships[0].author.id | https://openalex.org/A5007562201 |
| authorships[0].author.orcid | https://orcid.org/0000-0003-3952-2896 |
| authorships[0].author.display_name | Alejandro P. Gutiérrez |
| authorships[0].countries | GB |
| authorships[0].affiliations[0].institution_ids | https://openalex.org/I133960621, https://openalex.org/I98677209 |
| authorships[0].affiliations[0].raw_affiliation_string | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| authorships[0].institutions[0].id | https://openalex.org/I133960621 |
| authorships[0].institutions[0].ror | https://ror.org/01920rj20 |
| authorships[0].institutions[0].type | facility |
| authorships[0].institutions[0].lineage | https://openalex.org/I133960621, https://openalex.org/I2799693246, https://openalex.org/I4210087105, https://openalex.org/I98677209 |
| authorships[0].institutions[0].country_code | GB |
| authorships[0].institutions[0].display_name | Roslin Institute |
| authorships[0].institutions[1].id | https://openalex.org/I98677209 |
| authorships[0].institutions[1].ror | https://ror.org/01nrxwf90 |
| authorships[0].institutions[1].type | education |
| authorships[0].institutions[1].lineage | https://openalex.org/I98677209 |
| authorships[0].institutions[1].country_code | GB |
| authorships[0].institutions[1].display_name | University of Edinburgh |
| authorships[0].author_position | first |
| authorships[0].raw_author_name | Alejandro P. Gutierrez |
| authorships[0].is_corresponding | False |
| authorships[0].raw_affiliation_strings | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| authorships[1].author.id | https://openalex.org/A5074090663 |
| authorships[1].author.orcid | https://orcid.org/0000-0001-8307-423X |
| authorships[1].author.display_name | Jane E. Symonds |
| authorships[1].countries | NZ |
| authorships[1].affiliations[0].institution_ids | https://openalex.org/I62912653 |
| authorships[1].affiliations[0].raw_affiliation_string | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[1].institutions[0].id | https://openalex.org/I62912653 |
| authorships[1].institutions[0].ror | https://ror.org/03sffqe64 |
| authorships[1].institutions[0].type | nonprofit |
| authorships[1].institutions[0].lineage | https://openalex.org/I62912653 |
| authorships[1].institutions[0].country_code | NZ |
| authorships[1].institutions[0].display_name | Cawthron Institute |
| authorships[1].author_position | middle |
| authorships[1].raw_author_name | Jane Symonds |
| authorships[1].is_corresponding | False |
| authorships[1].raw_affiliation_strings | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[2].author.id | https://openalex.org/A5067149851 |
| authorships[2].author.orcid | https://orcid.org/0000-0002-3623-6918 |
| authorships[2].author.display_name | Nick King |
| authorships[2].countries | NZ |
| authorships[2].affiliations[0].institution_ids | https://openalex.org/I62912653 |
| authorships[2].affiliations[0].raw_affiliation_string | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[2].institutions[0].id | https://openalex.org/I62912653 |
| authorships[2].institutions[0].ror | https://ror.org/03sffqe64 |
| authorships[2].institutions[0].type | nonprofit |
| authorships[2].institutions[0].lineage | https://openalex.org/I62912653 |
| authorships[2].institutions[0].country_code | NZ |
| authorships[2].institutions[0].display_name | Cawthron Institute |
| authorships[2].author_position | middle |
| authorships[2].raw_author_name | Nick King |
| authorships[2].is_corresponding | False |
| authorships[2].raw_affiliation_strings | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[3].author.id | https://openalex.org/A5055632540 |
| authorships[3].author.orcid | https://orcid.org/0000-0003-0729-7188 |
| authorships[3].author.display_name | Konstanze Steiner |
| authorships[3].countries | NZ |
| authorships[3].affiliations[0].institution_ids | https://openalex.org/I62912653 |
| authorships[3].affiliations[0].raw_affiliation_string | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[3].institutions[0].id | https://openalex.org/I62912653 |
| authorships[3].institutions[0].ror | https://ror.org/03sffqe64 |
| authorships[3].institutions[0].type | nonprofit |
| authorships[3].institutions[0].lineage | https://openalex.org/I62912653 |
| authorships[3].institutions[0].country_code | NZ |
| authorships[3].institutions[0].display_name | Cawthron Institute |
| authorships[3].author_position | middle |
| authorships[3].raw_author_name | Konstanze Steiner |
| authorships[3].is_corresponding | False |
| authorships[3].raw_affiliation_strings | Cawthron Institute, 98 Halifax Street East, Nelson 7010, New Zealand |
| authorships[4].author.id | https://openalex.org/A5090783800 |
| authorships[4].author.orcid | https://orcid.org/0000-0002-2544-9918 |
| authorships[4].author.display_name | Tim P. Bean |
| authorships[4].countries | GB |
| authorships[4].affiliations[0].institution_ids | https://openalex.org/I133960621, https://openalex.org/I98677209 |
| authorships[4].affiliations[0].raw_affiliation_string | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| authorships[4].institutions[0].id | https://openalex.org/I133960621 |
| authorships[4].institutions[0].ror | https://ror.org/01920rj20 |
| authorships[4].institutions[0].type | facility |
| authorships[4].institutions[0].lineage | https://openalex.org/I133960621, https://openalex.org/I2799693246, https://openalex.org/I4210087105, https://openalex.org/I98677209 |
| authorships[4].institutions[0].country_code | GB |
| authorships[4].institutions[0].display_name | Roslin Institute |
| authorships[4].institutions[1].id | https://openalex.org/I98677209 |
| authorships[4].institutions[1].ror | https://ror.org/01nrxwf90 |
| authorships[4].institutions[1].type | education |
| authorships[4].institutions[1].lineage | https://openalex.org/I98677209 |
| authorships[4].institutions[1].country_code | GB |
| authorships[4].institutions[1].display_name | University of Edinburgh |
| authorships[4].author_position | middle |
| authorships[4].raw_author_name | Tim P. Bean |
| authorships[4].is_corresponding | False |
| authorships[4].raw_affiliation_strings | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| authorships[5].author.id | https://openalex.org/A5005051455 |
| authorships[5].author.orcid | https://orcid.org/0000-0003-1805-0762 |
| authorships[5].author.display_name | Ross D. Houston |
| authorships[5].countries | GB |
| authorships[5].affiliations[0].institution_ids | https://openalex.org/I133960621, https://openalex.org/I98677209 |
| authorships[5].affiliations[0].raw_affiliation_string | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| authorships[5].institutions[0].id | https://openalex.org/I133960621 |
| authorships[5].institutions[0].ror | https://ror.org/01920rj20 |
| authorships[5].institutions[0].type | facility |
| authorships[5].institutions[0].lineage | https://openalex.org/I133960621, https://openalex.org/I2799693246, https://openalex.org/I4210087105, https://openalex.org/I98677209 |
| authorships[5].institutions[0].country_code | GB |
| authorships[5].institutions[0].display_name | Roslin Institute |
| authorships[5].institutions[1].id | https://openalex.org/I98677209 |
| authorships[5].institutions[1].ror | https://ror.org/01nrxwf90 |
| authorships[5].institutions[1].type | education |
| authorships[5].institutions[1].lineage | https://openalex.org/I98677209 |
| authorships[5].institutions[1].country_code | GB |
| authorships[5].institutions[1].display_name | University of Edinburgh |
| authorships[5].author_position | last |
| authorships[5].raw_author_name | Ross D. Houston |
| authorships[5].is_corresponding | True |
| authorships[5].raw_affiliation_strings | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian EH25 9RG, United Kingdom |
| has_content.pdf | True |
| has_content.grobid_xml | True |
| is_paratext | False |
| open_access.is_oa | True |
| open_access.oa_url | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdf |
| open_access.oa_status | green |
| open_access.any_repository_has_fulltext | False |
| created_date | 2025-10-10T00:00:00 |
| display_name | Potential of genomic selection for improvement of resistance to Ostreid Herpes virus in Pacific oyster (Crassostrea gigas) |
| has_fulltext | True |
| is_retracted | False |
| updated_date | 2025-11-06T03:46:38.306776 |
| primary_topic.id | https://openalex.org/T10594 |
| primary_topic.field.id | https://openalex.org/fields/13 |
| primary_topic.field.display_name | Biochemistry, Genetics and Molecular Biology |
| primary_topic.score | 0.9993000030517578 |
| primary_topic.domain.id | https://openalex.org/domains/1 |
| primary_topic.domain.display_name | Life Sciences |
| primary_topic.subfield.id | https://openalex.org/subfields/1311 |
| primary_topic.subfield.display_name | Genetics |
| primary_topic.display_name | Genetic and phenotypic traits in livestock |
| related_works | https://openalex.org/W2059667255, https://openalex.org/W2287971758, https://openalex.org/W2093318071, https://openalex.org/W338806160, https://openalex.org/W2035276432, https://openalex.org/W1978120352, https://openalex.org/W2806244731, https://openalex.org/W4385880393, https://openalex.org/W2065406285, https://openalex.org/W3144428608 |
| cited_by_count | 3 |
| counts_by_year[0].year | 2021 |
| counts_by_year[0].cited_by_count | 1 |
| counts_by_year[1].year | 2020 |
| counts_by_year[1].cited_by_count | 1 |
| counts_by_year[2].year | 2019 |
| counts_by_year[2].cited_by_count | 1 |
| locations_count | 1 |
| best_oa_location.id | doi:10.1101/754473 |
| best_oa_location.is_oa | True |
| best_oa_location.source.id | https://openalex.org/S4306402567 |
| best_oa_location.source.issn | |
| best_oa_location.source.type | repository |
| best_oa_location.source.is_oa | False |
| best_oa_location.source.issn_l | |
| best_oa_location.source.is_core | False |
| best_oa_location.source.is_in_doaj | False |
| best_oa_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| best_oa_location.source.host_organization | https://openalex.org/I2750212522 |
| best_oa_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| best_oa_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| best_oa_location.license | cc-by-nc-nd |
| best_oa_location.pdf_url | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdf |
| best_oa_location.version | acceptedVersion |
| best_oa_location.raw_type | posted-content |
| best_oa_location.license_id | https://openalex.org/licenses/cc-by-nc-nd |
| best_oa_location.is_accepted | True |
| best_oa_location.is_published | False |
| best_oa_location.raw_source_name | |
| best_oa_location.landing_page_url | https://doi.org/10.1101/754473 |
| primary_location.id | doi:10.1101/754473 |
| primary_location.is_oa | True |
| primary_location.source.id | https://openalex.org/S4306402567 |
| primary_location.source.issn | |
| primary_location.source.type | repository |
| primary_location.source.is_oa | False |
| primary_location.source.issn_l | |
| primary_location.source.is_core | False |
| primary_location.source.is_in_doaj | False |
| primary_location.source.display_name | bioRxiv (Cold Spring Harbor Laboratory) |
| primary_location.source.host_organization | https://openalex.org/I2750212522 |
| primary_location.source.host_organization_name | Cold Spring Harbor Laboratory |
| primary_location.source.host_organization_lineage | https://openalex.org/I2750212522 |
| primary_location.license | cc-by-nc-nd |
| primary_location.pdf_url | https://www.biorxiv.org/content/biorxiv/early/2019/09/05/754473.full.pdf |
| primary_location.version | acceptedVersion |
| primary_location.raw_type | posted-content |
| primary_location.license_id | https://openalex.org/licenses/cc-by-nc-nd |
| primary_location.is_accepted | True |
| primary_location.is_published | False |
| primary_location.raw_source_name | |
| primary_location.landing_page_url | https://doi.org/10.1101/754473 |
| publication_date | 2019-09-05 |
| publication_year | 2019 |
| referenced_works | https://openalex.org/W2041000916, https://openalex.org/W2161245845, https://openalex.org/W2587790734, https://openalex.org/W2082544445, https://openalex.org/W2559765384, https://openalex.org/W2099085143, https://openalex.org/W2895636883, https://openalex.org/W1971993382, https://openalex.org/W638433014, https://openalex.org/W589460643, https://openalex.org/W1893714885, https://openalex.org/W2234555226, https://openalex.org/W2614991274, https://openalex.org/W2773396303, https://openalex.org/W2890596376, https://openalex.org/W2619688893, https://openalex.org/W2273763831, https://openalex.org/W2740620321, https://openalex.org/W2139682693, https://openalex.org/W2107473082, https://openalex.org/W2017259933, https://openalex.org/W2139270239, https://openalex.org/W2224056471, https://openalex.org/W2075009410, https://openalex.org/W2953142579, https://openalex.org/W2805462056, https://openalex.org/W2527385387, https://openalex.org/W2794128771, https://openalex.org/W2013592216, https://openalex.org/W1805633291, https://openalex.org/W2602978763, https://openalex.org/W2744114422, https://openalex.org/W2791415333, https://openalex.org/W1986719360, https://openalex.org/W2019343097, https://openalex.org/W2174827397, https://openalex.org/W2583421653, https://openalex.org/W2805274591, https://openalex.org/W2067715889, https://openalex.org/W1990105332, https://openalex.org/W2271012763, https://openalex.org/W2781257652, https://openalex.org/W2765473855, https://openalex.org/W2026345779, https://openalex.org/W55288184, https://openalex.org/W1928998639, https://openalex.org/W3085022174, https://openalex.org/W2785457829 |
| referenced_works_count | 48 |
| abstract_inverted_index.a | 68, 137, 197 |
| abstract_inverted_index.An | 100 |
| abstract_inverted_index.GS | 23, 187, 214 |
| abstract_inverted_index.In | 1, 76 |
| abstract_inverted_index.an | 107 |
| abstract_inverted_index.in | 24, 34, 59, 91, 140, 188 |
| abstract_inverted_index.is | 49 |
| abstract_inverted_index.it | 96 |
| abstract_inverted_index.of | 22, 38, 71, 84, 200, 213 |
| abstract_inverted_index.on | 151, 172 |
| abstract_inverted_index.to | 10, 32, 67, 97, 147, 204 |
| abstract_inverted_index.we | 80 |
| abstract_inverted_index.768 | 117 |
| abstract_inverted_index.SNP | 6, 125, 166 |
| abstract_inverted_index.The | 20 |
| abstract_inverted_index.and | 28, 62, 94, 153, 165, 193 |
| abstract_inverted_index.are | 8 |
| abstract_inverted_index.for | 17, 87, 112, 114, 127, 132, 186 |
| abstract_inverted_index.had | 169 |
| abstract_inverted_index.has | 29, 63 |
| abstract_inverted_index.low | 198 |
| abstract_inverted_index.one | 37 |
| abstract_inverted_index.the | 30, 39, 50, 72, 77, 82, 122, 133, 184, 211 |
| abstract_inverted_index.was | 104, 130, 159 |
| abstract_inverted_index.GWAS | 129 |
| abstract_inverted_index.OsHV | 90 |
| abstract_inverted_index.SNPs | 201 |
| abstract_inverted_index.This | 54, 182 |
| abstract_inverted_index.been | 65 |
| abstract_inverted_index.cost | 216 |
| abstract_inverted_index.from | 145 |
| abstract_inverted_index.help | 33 |
| abstract_inverted_index.host | 88 |
| abstract_inverted_index.main | 40 |
| abstract_inverted_index.mass | 57 |
| abstract_inverted_index.more | 160, 215 |
| abstract_inverted_index.than | 162 |
| abstract_inverted_index.that | 196 |
| abstract_inverted_index.thus | 208 |
| abstract_inverted_index.used | 9 |
| abstract_inverted_index.were | 119 |
| abstract_inverted_index.with | 36 |
| abstract_inverted_index.(GS), | 4 |
| abstract_inverted_index.GBLUP | 138 |
| abstract_inverted_index.SNPs. | 181 |
| abstract_inverted_index.array | 126 |
| abstract_inverted_index.based | 150 |
| abstract_inverted_index.below | 179 |
| abstract_inverted_index.days. | 116 |
| abstract_inverted_index.farms | 60 |
| abstract_inverted_index.looks | 26 |
| abstract_inverted_index.might | 202 |
| abstract_inverted_index.seven | 115 |
| abstract_inverted_index.trait | 135 |
| abstract_inverted_index.until | 175 |
| abstract_inverted_index.using | 106, 121, 136 |
| abstract_inverted_index.virus | 109 |
| abstract_inverted_index.which | 48 |
| abstract_inverted_index.OsHV-1 | 101 |
| abstract_inverted_index.causes | 55 |
| abstract_inverted_index.gEBVs, | 207 |
| abstract_inverted_index.impact | 171 |
| abstract_inverted_index.issues | 41 |
| abstract_inverted_index.little | 170 |
| abstract_inverted_index.mainly | 64 |
| abstract_inverted_index.making | 210 |
| abstract_inverted_index.marker | 176 |
| abstract_inverted_index.medium | 123 |
| abstract_inverted_index.number | 199 |
| abstract_inverted_index.obtain | 205 |
| abstract_inverted_index.oyster | 45, 190 |
| abstract_inverted_index.ranged | 144 |
| abstract_inverted_index.study, | 79 |
| abstract_inverted_index.values | 15 |
| abstract_inverted_index.∼500 | 180 |
| abstract_inverted_index.(gEBVs) | 16 |
| abstract_inverted_index.BLUPF90 | 141 |
| abstract_inverted_index.Genomic | 157 |
| abstract_inverted_index.Ostreid | 73 |
| abstract_inverted_index.Pacific | 44, 92, 189 |
| abstract_inverted_index.current | 78 |
| abstract_inverted_index.dealing | 35 |
| abstract_inverted_index.density | 124, 167 |
| abstract_inverted_index.disease | 102 |
| abstract_inverted_index.dropped | 178 |
| abstract_inverted_index.genomic | 2, 12, 85, 154 |
| abstract_inverted_index.markers | 7 |
| abstract_inverted_index.oysters | 113 |
| abstract_inverted_index.samples | 118 |
| abstract_inverted_index.suffice | 203 |
| abstract_inverted_index.variant | 70 |
| abstract_inverted_index.Abstract | 0 |
| abstract_inverted_index.accuracy | 174 |
| abstract_inverted_index.accurate | 161, 206 |
| abstract_inverted_index.approach | 139 |
| abstract_inverted_index.breeding | 14, 191 |
| abstract_inverted_index.compared | 95 |
| abstract_inverted_index.exposure | 110 |
| abstract_inverted_index.generate | 11 |
| abstract_inverted_index.oysters, | 93 |
| abstract_inverted_index.oysters. | 128 |
| abstract_inverted_index.pedigree | 152, 163 |
| abstract_inverted_index.periodic | 56 |
| abstract_inverted_index.programs | 192 |
| abstract_inverted_index.specific | 69 |
| abstract_inverted_index.survival | 134 |
| abstract_inverted_index.affecting | 43 |
| abstract_inverted_index.challenge | 103 |
| abstract_inverted_index.currently | 42 |
| abstract_inverted_index.densities | 177 |
| abstract_inverted_index.estimated | 13 |
| abstract_inverted_index.evaluated | 81 |
| abstract_inverted_index.genotyped | 120 |
| abstract_inverted_index.mortality | 52, 58 |
| abstract_inverted_index.performed | 105, 131 |
| abstract_inverted_index.potential | 31, 83, 185 |
| abstract_inverted_index.promising | 27 |
| abstract_inverted_index.reduction | 168 |
| abstract_inverted_index.selection | 3, 18, 86 |
| abstract_inverted_index.shellfish | 25 |
| abstract_inverted_index.software. | 142 |
| abstract_inverted_index.treatment | 111 |
| abstract_inverted_index.worldwide | 61 |
| abstract_inverted_index.“summer | 51 |
| abstract_inverted_index.0.25±0.05 | 146 |
| abstract_inverted_index.0.37±0.05 | 148 |
| abstract_inverted_index.attributed | 66 |
| abstract_inverted_index.effective. | 217 |
| abstract_inverted_index.prediction | 158, 173 |
| abstract_inverted_index.production | 46 |
| abstract_inverted_index.resistance | 89 |
| abstract_inverted_index.worldwide, | 47 |
| abstract_inverted_index.(mean±s.e) | 149 |
| abstract_inverted_index.application | 21 |
| abstract_inverted_index.approaches. | 99 |
| abstract_inverted_index.candidates. | 19 |
| abstract_inverted_index.genome-wide | 5 |
| abstract_inverted_index.herpesvirus | 74 |
| abstract_inverted_index.potentially | 209 |
| abstract_inverted_index.prediction, | 164 |
| abstract_inverted_index.Heritability | 143 |
| abstract_inverted_index.demonstrates | 183, 195 |
| abstract_inverted_index.importantly, | 194 |
| abstract_inverted_index.information, | 155 |
| abstract_inverted_index.syndrome”. | 53 |
| abstract_inverted_index.respectively. | 156 |
| abstract_inverted_index.implementation | 212 |
| abstract_inverted_index.pedigree-based | 98 |
| abstract_inverted_index.(OsHV-1-μvar). | 75 |
| abstract_inverted_index.immersion-based | 108 |
| cited_by_percentile_year.max | 94 |
| cited_by_percentile_year.min | 89 |
| corresponding_author_ids | https://openalex.org/A5005051455 |
| countries_distinct_count | 2 |
| institutions_distinct_count | 6 |
| corresponding_institution_ids | https://openalex.org/I133960621, https://openalex.org/I98677209 |
| sustainable_development_goals[0].id | https://metadata.un.org/sdg/3 |
| sustainable_development_goals[0].score | 0.6200000047683716 |
| sustainable_development_goals[0].display_name | Good health and well-being |
| citation_normalized_percentile.value | 0.72510218 |
| citation_normalized_percentile.is_in_top_1_percent | False |
| citation_normalized_percentile.is_in_top_10_percent | False |