Exploring foci of:
arXiv (Cornell University)
Prefix-free graphs and suffix array construction in sublinear space
June 2023 • Andrej Baláž, Alessia Petescia
A recent paradigm shift in bioinformatics from a single reference genome to a pangenome brought with it several graph structures. These graph structures must implement operations, such as efficient construction from multiple genomes and read mapping. Read mapping is a well-studied problem in sequential data, and, together with data structures such as suffix array and Burrows-Wheeler transform, allows for efficient computation. Attempts to achieve comparatively high performance on graphs bring many complications si…
Computer Science
Prefix
Data Structure
Theoretical Computer Science
Algorithm
Discrete Mathematics
Mathematics
Programming Language
Philosophy